This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4r40

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (17:43, 20 September 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal Structure of TolB/Pal complex from Yersinia pestis.==
==Crystal Structure of TolB/Pal complex from Yersinia pestis.==
-
<StructureSection load='4r40' size='340' side='right' caption='[[4r40]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
+
<StructureSection load='4r40' size='340' side='right'caption='[[4r40]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4r40]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4R40 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4R40 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4r40]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Yersinia_pestis_CO92 Yersinia pestis CO92]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4R40 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4R40 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.496&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4pwz|4pwz]], [[4pwt|4pwt]]</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4r40 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4r40 OCA], [https://pdbe.org/4r40 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4r40 RCSB], [https://www.ebi.ac.uk/pdbsum/4r40 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4r40 ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4r40 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4r40 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4r40 RCSB], [http://www.ebi.ac.uk/pdbsum/4r40 PDBsum]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/TOLB_YERPE TOLB_YERPE]] Involved in the TonB-independent uptake of proteins (By similarity).
+
[https://www.uniprot.org/uniprot/TOLB_YERPE TOLB_YERPE] Involved in the TonB-independent uptake of proteins (By similarity).
 +
 
 +
==See Also==
 +
*[[Pal|Pal]]
 +
*[[TolB|TolB]]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Anderson, W F]]
+
[[Category: Large Structures]]
-
[[Category: Structural genomic]]
+
[[Category: Yersinia pestis CO92]]
-
[[Category: Joachimiak, A]]
+
[[Category: Anderson WF]]
-
[[Category: Kim, Y]]
+
[[Category: Joachimiak A]]
-
[[Category: Maltseva, N]]
+
[[Category: Kim Y]]
-
[[Category: Osipiuk, J]]
+
[[Category: Maltseva N]]
-
[[Category: Alpha-beta fold and beta propeller fold]]
+
[[Category: Osipiuk J]]
-
[[Category: Csgid]]
+
-
[[Category: National institute of allergy and infectious disease]]
+
-
[[Category: Niaid]]
+
-
[[Category: Protein transport]]
+
-
[[Category: Translocation and peptidoglycan-associated outer membrane lipoprotein]]
+

Current revision

Crystal Structure of TolB/Pal complex from Yersinia pestis.

PDB ID 4r40

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools