This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4s38

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (18:02, 20 September 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==IspG in complex MEcPP==
==IspG in complex MEcPP==
-
<StructureSection load='4s38' size='340' side='right' caption='[[4s38]], [[Resolution|resolution]] 1.40&Aring;' scene=''>
+
<StructureSection load='4s38' size='340' side='right'caption='[[4s38]], [[Resolution|resolution]] 1.40&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4s38]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4S38 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4S38 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4s38]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4S38 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4S38 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=1PE:PENTAETHYLENE+GLYCOL'>1PE</scene>, <scene name='pdbligand=CDI:2C-METHYL-D-ERYTHRITOL+2,4-CYCLODIPHOSPHATE'>CDI</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.4&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=KCX:LYSINE+NZ-CARBOXYLIC+ACID'>KCX</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=1PE:PENTAETHYLENE+GLYCOL'>1PE</scene>, <scene name='pdbligand=CDI:2C-METHYL-D-ERYTHRITOL+2,4-CYCLODIPHOSPHATE'>CDI</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=KCX:LYSINE+NZ-CARBOXYLIC+ACID'>KCX</scene>, <scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4g9p|4g9p]], [[2y0f|2y0f]], [[3noy|3noy]], [[4s39|4s39]], [[4s3a|4s3a]], [[4s3b|4s3b]], [[4s3c|4s3c]], [[4s3d|4s3d]], [[4s3e|4s3e]], [[4s3f|4s3f]]</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4s38 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4s38 OCA], [https://pdbe.org/4s38 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4s38 RCSB], [https://www.ebi.ac.uk/pdbsum/4s38 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4s38 ProSAT]</span></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate_synthase (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.17.7.1 1.17.7.1] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4s38 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4s38 OCA], [http://pdbe.org/4s38 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4s38 RCSB], [http://www.ebi.ac.uk/pdbsum/4s38 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4s38 ProSAT]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/ISPG_THET8 ISPG_THET8]] Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate.
+
[https://www.uniprot.org/uniprot/ISPG_THET8 ISPG_THET8] Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 21: Line 19:
</div>
</div>
<div class="pdbe-citations 4s38" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 4s38" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[IspG|IspG]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Abdel-Azeim, S]]
+
[[Category: Large Structures]]
-
[[Category: Bacher, A]]
+
[[Category: Thermus thermophilus HB8]]
-
[[Category: Dowd, B O]]
+
[[Category: Abdel-Azeim S]]
-
[[Category: Eppinger, J]]
+
[[Category: Bacher A]]
-
[[Category: Frank, A]]
+
[[Category: Eppinger J]]
-
[[Category: Groll, M]]
+
[[Category: Frank A]]
-
[[Category: Guerra, F]]
+
[[Category: Groll M]]
-
[[Category: Guodong, R]]
+
[[Category: Guerra F]]
-
[[Category: Li, J]]
+
[[Category: Guodong R]]
-
[[Category: Oldfield, E]]
+
[[Category: Li J]]
-
[[Category: Quitterer, F]]
+
[[Category: O'Dowd B]]
-
[[Category: Wang, K]]
+
[[Category: Oldfield E]]
-
[[Category: Drug development]]
+
[[Category: Quitterer F]]
-
[[Category: Iron-sulfur enzyme]]
+
[[Category: Wang K]]
-
[[Category: Methylerythritol-phosphate pathway]]
+
-
[[Category: Oxidoreductase]]
+
-
[[Category: Reaction mechanism]]
+
-
[[Category: Terpene biosynthesis]]
+

Current revision

IspG in complex MEcPP

PDB ID 4s38

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools