This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5jkd

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (18:56, 20 September 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==Crystal structure of human IZUMO1-JUNO complex (crystal form 2)==
==Crystal structure of human IZUMO1-JUNO complex (crystal form 2)==
-
<StructureSection load='5jkd' size='340' side='right' caption='[[5jkd]], [[Resolution|resolution]] 2.90&Aring;' scene=''>
+
<StructureSection load='5jkd' size='340' side='right'caption='[[5jkd]], [[Resolution|resolution]] 2.90&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5jkd]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JKD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5JKD FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5jkd]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JKD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5JKD FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.9&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5jke|5jke]], [[5jkc|5jkc]], [[5jkb|5jkb]], [[5jka|5jka]], [[5jk9|5jk9]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5jkd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jkd OCA], [http://pdbe.org/5jkd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5jkd RCSB], [http://www.ebi.ac.uk/pdbsum/5jkd PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5jkd ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5jkd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jkd OCA], [https://pdbe.org/5jkd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5jkd RCSB], [https://www.ebi.ac.uk/pdbsum/5jkd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5jkd ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/IZUM1_HUMAN IZUM1_HUMAN]] Essential sperm cell-surface protein required for fertilization by acting as a ligand for IZUMO1R/JUNO receptor on egg. The IZUMO1:IZUMO1R/JUNO interaction is a necessary adhesion event between sperm and egg that is required for fertilization but is not sufficient for cell fusion. The ligand-receptor interaction probably does not act as a membrane 'fusogen'.<ref>PMID:15759005</ref> [[http://www.uniprot.org/uniprot/JUNO_HUMAN JUNO_HUMAN]] Receptor for IZUMO1 present at the cell surface of oocytes (oolemma), which is essential for species-specific gamete recognition and fertilization. The IZUMO1:IZUMO1R/JUNO interaction is a necessary adhesion event between sperm and egg that is required for fertilization but is not sufficient for cell fusion. The ligand-receptor interaction probably does not act as a membrane 'fusogen'. Does not bind folate.[UniProtKB:Q9EQF4]
+
[https://www.uniprot.org/uniprot/IZUM1_HUMAN IZUM1_HUMAN] Essential sperm cell-surface protein required for fertilization by acting as a ligand for IZUMO1R/JUNO receptor on egg. The IZUMO1:IZUMO1R/JUNO interaction is a necessary adhesion event between sperm and egg that is required for fertilization but is not sufficient for cell fusion. The ligand-receptor interaction probably does not act as a membrane 'fusogen'.<ref>PMID:15759005</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 23: Line 23:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Ishida, H]]
+
[[Category: Homo sapiens]]
-
[[Category: Ohto, U]]
+
[[Category: Large Structures]]
-
[[Category: Shimizu, T]]
+
[[Category: Ishida H]]
-
[[Category: Cell adhesion]]
+
[[Category: Ohto U]]
-
[[Category: Fertilization]]
+
[[Category: Shimizu T]]
-
[[Category: Izumo1]]
+
-
[[Category: Juno]]
+

Current revision

Crystal structure of human IZUMO1-JUNO complex (crystal form 2)

PDB ID 5jkd

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools