This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5jki

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (18:57, 20 September 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==Crystal structure of the first transmembrane PAP2 type phosphatidylglycerolphosphate phosphatase from Bacillus subtilis==
==Crystal structure of the first transmembrane PAP2 type phosphatidylglycerolphosphate phosphatase from Bacillus subtilis==
-
<StructureSection load='5jki' size='340' side='right' caption='[[5jki]], [[Resolution|resolution]] 2.25&Aring;' scene=''>
+
<StructureSection load='5jki' size='340' side='right'caption='[[5jki]], [[Resolution|resolution]] 2.25&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5jki]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JKI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5JKI FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5jki]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis_subsp._subtilis_str._168 Bacillus subtilis subsp. subtilis str. 168]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JKI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5JKI FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=OLC:(2R)-2,3-DIHYDROXYPROPYL+(9Z)-OCTADEC-9-ENOATE'>OLC</scene>, <scene name='pdbligand=UNL:UNKNOWN+LIGAND'>UNL</scene>, <scene name='pdbligand=WO4:TUNGSTATE(VI)ION'>WO4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.25&#8491;</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5jki FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jki OCA], [http://pdbe.org/5jki PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5jki RCSB], [http://www.ebi.ac.uk/pdbsum/5jki PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5jki ProSAT]</span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=OLC:(2R)-2,3-DIHYDROXYPROPYL+(9Z)-OCTADEC-9-ENOATE'>OLC</scene>, <scene name='pdbligand=UNL:UNKNOWN+LIGAND'>UNL</scene>, <scene name='pdbligand=WO4:TUNGSTATE(VI)ION'>WO4</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5jki FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jki OCA], [https://pdbe.org/5jki PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5jki RCSB], [https://www.ebi.ac.uk/pdbsum/5jki PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5jki ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/PGPB_BACSU PGPB_BACSU] Catalyzes the dephosphorylation of phosphatidylglycerophosphate (PGP) to phosphatidylglycerol. Also has undecaprenyl pyrophosphate phosphatase activity, required for the biosynthesis of the lipid carrier undecaprenyl phosphate.<ref>PMID:28168443</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 20: Line 23:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Auger, R]]
+
[[Category: Bacillus subtilis subsp. subtilis str. 168]]
-
[[Category: Caffrey, M]]
+
[[Category: Large Structures]]
-
[[Category: Delbrassine, F]]
+
[[Category: Auger R]]
-
[[Category: Foglino, M]]
+
[[Category: Caffrey M]]
-
[[Category: Ghachi, M El]]
+
[[Category: Delbrassine F]]
-
[[Category: Guiseppe, A]]
+
[[Category: El Ghachi M]]
-
[[Category: Howe, N]]
+
[[Category: Foglino M]]
-
[[Category: Lampion, A]]
+
[[Category: Guiseppe A]]
-
[[Category: Mengin-lecreulx, D]]
+
[[Category: Howe N]]
-
[[Category: Perlier, S]]
+
[[Category: Lampion A]]
-
[[Category: Roure, S]]
+
[[Category: Mengin-lecreulx D]]
-
[[Category: Sauvage, E]]
+
[[Category: Perlier S]]
-
[[Category: Touze, T]]
+
[[Category: Roure S]]
-
[[Category: Vogeley, L]]
+
[[Category: Sauvage E]]
-
[[Category: Hydrolase]]
+
[[Category: Touze T]]
-
[[Category: Phophatidylglycerol phosphate phosphatase]]
+
[[Category: Vogeley L]]
-
[[Category: Transmembrane pap2]]
+

Current revision

Crystal structure of the first transmembrane PAP2 type phosphatidylglycerolphosphate phosphatase from Bacillus subtilis

PDB ID 5jki

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools