This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5jpi

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (19:01, 20 September 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='5jpi' size='340' side='right'caption='[[5jpi]], [[Resolution|resolution]] 2.15&Aring;' scene=''>
<StructureSection load='5jpi' size='340' side='right'caption='[[5jpi]], [[Resolution|resolution]] 2.15&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5jpi]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Crypv Crypv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JPI OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5JPI FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5jpi]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Cryptosporidium_parvum Cryptosporidium parvum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JPI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5JPI FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=DEA:D-ERITADENINE'>DEA</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.15&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5hm8|5hm8]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=DEA:D-ERITADENINE'>DEA</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">cgd3_80 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=5807 CRYPV])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5jpi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jpi OCA], [https://pdbe.org/5jpi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5jpi RCSB], [https://www.ebi.ac.uk/pdbsum/5jpi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5jpi ProSAT]</span></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Adenosylhomocysteinase Adenosylhomocysteinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.3.1.1 3.3.1.1] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5jpi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jpi OCA], [http://pdbe.org/5jpi PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5jpi RCSB], [http://www.ebi.ac.uk/pdbsum/5jpi PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5jpi ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q5CPH1_CRYPI Q5CPH1_CRYPI]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Adenosylhomocysteinase]]
+
[[Category: Cryptosporidium parvum]]
-
[[Category: Crypv]]
+
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Anderson, W F]]
+
[[Category: Anderson WF]]
-
[[Category: Bishop, B]]
+
[[Category: Bishop B]]
-
[[Category: Structural genomic]]
+
[[Category: Dubrovska I]]
-
[[Category: Dubrovska, I]]
+
[[Category: Kiryukhina O]]
-
[[Category: Kiryukhina, O]]
+
[[Category: Kwon K]]
-
[[Category: Kwon, K]]
+
[[Category: Minasov G]]
-
[[Category: Minasov, G]]
+
[[Category: Shuvalova L]]
-
[[Category: Shuvalova, L]]
+
-
[[Category: Csgid]]
+
-
[[Category: D-eritadenine]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Nad]]
+
-
[[Category: S-adenosylhomocysteinase]]
+

Current revision

2.15 Angstrom Crystal Structure of S-adenosylhomocysteinase from Cryptosporidium parvum in Complex with D-Eritadenine and NAD

PDB ID 5jpi

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools