This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4yz6

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:10, 27 September 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==Crystal Structure of Myc3[44-238] from Arabidopsis in complex with Jaz1 peptide [200-221]==
==Crystal Structure of Myc3[44-238] from Arabidopsis in complex with Jaz1 peptide [200-221]==
-
<StructureSection load='4yz6' size='340' side='right' caption='[[4yz6]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
+
<StructureSection load='4yz6' size='340' side='right'caption='[[4yz6]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4yz6]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Arath Arath]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YZ6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4YZ6 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4yz6]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YZ6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4YZ6 FirstGlance]. <br>
-
</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4rru|4rru]], [[4rqw|4rqw]], [[4rs9|4rs9]]</td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.95&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">MYC3, ATR2, BHLH5, EN36, At5g46760, MZA15.18 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ARATH])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4yz6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4yz6 OCA], [https://pdbe.org/4yz6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4yz6 RCSB], [https://www.ebi.ac.uk/pdbsum/4yz6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4yz6 ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4yz6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4yz6 OCA], [http://pdbe.org/4yz6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4yz6 RCSB], [http://www.ebi.ac.uk/pdbsum/4yz6 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4yz6 ProSAT]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/MYC3_ARATH MYC3_ARATH]] Transcription factor involved in tryptophan, jasmonic acid (JA) and other stress-responsive gene regulation. With MYC2 and MYC4, controls additively subsets of JA-dependent responses. Can form complexes with all known glucosinolate-related MYBs to regulate glucosinolate biosynthesis. Binds to the G-box (5'-CACGTG-3') of promoters. Activates multiple TIFY/JAZ promoters.<ref>PMID:12136026</ref> <ref>PMID:21242320</ref> <ref>PMID:21321051</ref> <ref>PMID:21335373</ref> <ref>PMID:23943862</ref> [[http://www.uniprot.org/uniprot/TI10A_ARATH TI10A_ARATH]] Repressor of jasmonate responses negatively regulated by the proteasome in an SCF(COI1) E3 ubiquitin-protein ligase complex-dependent manner. Jasmonoyl-isoleucine (JA-Ile) specifically promotes COI1-TIFY10A/JAZ1 interaction. Interacts with COI1 and inositol pentakisphosphate to form a high-affinity jasmonates coreceptor.<ref>PMID:17637675</ref> <ref>PMID:17637677</ref> <ref>PMID:19151223</ref>
+
[https://www.uniprot.org/uniprot/MYC3_ARATH MYC3_ARATH] Transcription factor involved in tryptophan, jasmonic acid (JA) and other stress-responsive gene regulation. With MYC2 and MYC4, controls additively subsets of JA-dependent responses. Can form complexes with all known glucosinolate-related MYBs to regulate glucosinolate biosynthesis. Binds to the G-box (5'-CACGTG-3') of promoters. Activates multiple TIFY/JAZ promoters.<ref>PMID:12136026</ref> <ref>PMID:21242320</ref> <ref>PMID:21321051</ref> <ref>PMID:21335373</ref> <ref>PMID:23943862</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 23: Line 22:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Arath]]
+
[[Category: Arabidopsis thaliana]]
-
[[Category: Brunzelle, J]]
+
[[Category: Large Structures]]
-
[[Category: HE, S Y]]
+
[[Category: Brunzelle J]]
-
[[Category: Ke, J]]
+
[[Category: HE SY]]
-
[[Category: Melcher, K]]
+
[[Category: Ke J]]
-
[[Category: Xu, H E]]
+
[[Category: Melcher K]]
-
[[Category: Zhang, F]]
+
[[Category: Xu HE]]
-
[[Category: Jasmonate signaling pathway]]
+
[[Category: Zhang F]]
-
[[Category: Jaz1 repressor]]
+
-
[[Category: Myc3 transcription factor]]
+
-
[[Category: Plant transcriptional regulation]]
+
-
[[Category: Transcription regulator]]
+

Current revision

Crystal Structure of Myc3[44-238] from Arabidopsis in complex with Jaz1 peptide [200-221]

PDB ID 4yz6

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools