4z3p
From Proteopedia
(Difference between revisions)
(New page: '''Unreleased structure''' The entry 4z3p is ON HOLD until sometime in the future Authors: Mousa, J.J., Bruner, S.D. Description: MATE transporter ClbM in complex with Rb+ [[Category: ...) |
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- | '''Unreleased structure''' | ||
- | + | ==MATE transporter ClbM in complex with Rb+== | |
+ | <StructureSection load='4z3p' size='340' side='right'caption='[[4z3p]], [[Resolution|resolution]] 3.30Å' scene=''> | ||
+ | == Structural highlights == | ||
+ | <table><tr><td colspan='2'>[[4z3p]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4Z3P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4Z3P FirstGlance]. <br> | ||
+ | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.3Å</td></tr> | ||
+ | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CAC:CACODYLATE+ION'>CAC</scene>, <scene name='pdbligand=RB:RUBIDIUM+ION'>RB</scene></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4z3p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4z3p OCA], [https://pdbe.org/4z3p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4z3p RCSB], [https://www.ebi.ac.uk/pdbsum/4z3p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4z3p ProSAT]</span></td></tr> | ||
+ | </table> | ||
+ | == Function == | ||
+ | [https://www.uniprot.org/uniprot/Q0P7K3_ECOLX Q0P7K3_ECOLX] | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Various forms of cancer have been linked to the carcinogenic activities of microorganisms(1-3). The virulent gene island polyketide synthase (pks) produces the secondary metabolite colibactin, a genotoxic molecule(s) causing double-stranded DNA breaks(4) and enhanced colorectal cancer development(5,6). Colibactin biosynthesis involves a prodrug resistance strategy where an N-terminal prodrug scaffold (precolibactin) is assembled, transported into the periplasm and cleaved to release the mature product(7-10). Here, we show that ClbM, a multidrug and toxic compound extrusion (MATE) transporter, is a key component involved in colibactin activity and transport. Disruption of clbM attenuated pks+ E. coli-induced DNA damage in vitro and significantly decreased the DNA damage response in gnotobiotic Il10(-/-) mice. Colonization experiments performed in mice or zebrafish animal models indicate that clbM is not implicated in E. coli niche establishment. The X-ray structure of ClbM shows a structural motif common to the recently described MATE family. The 12-transmembrane ClbM is characterized as a cation-coupled antiporter, and residues important to the cation-binding site are identified. Our data identify ClbM as a precolibactin transporter and provide the first structure of a MATE transporter with a defined and specific biological function. | ||
- | + | MATE transport of the E. coli-derived genotoxin colibactin.,Mousa JJ, Yang Y, Tomkovich S, Shima A, Newsome RC, Tripathi P, Oswald E, Bruner SD, Jobin C Nat Microbiol. 2016 Jan 11;1:15009. doi: 10.1038/nmicrobiol.2015.9. PMID:27571755<ref>PMID:27571755</ref> | |
- | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
- | [[Category: | + | </div> |
- | [[Category: Bruner | + | <div class="pdbe-citations 4z3p" style="background-color:#fffaf0;"></div> |
- | [[Category: Mousa | + | == References == |
+ | <references/> | ||
+ | __TOC__ | ||
+ | </StructureSection> | ||
+ | [[Category: Escherichia coli]] | ||
+ | [[Category: Large Structures]] | ||
+ | [[Category: Bruner SD]] | ||
+ | [[Category: Mousa JJ]] |
Current revision
MATE transporter ClbM in complex with Rb+
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