This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4zah

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:15, 27 September 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==Crystal structure of sugar aminotransferase WecE with External Aldimine VII from Escherichia coli K-12==
==Crystal structure of sugar aminotransferase WecE with External Aldimine VII from Escherichia coli K-12==
-
<StructureSection load='4zah' size='340' side='right' caption='[[4zah]], [[Resolution|resolution]] 2.24&Aring;' scene=''>
+
<StructureSection load='4zah' size='340' side='right'caption='[[4zah]], [[Resolution|resolution]] 2.24&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4zah]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Ecoli Ecoli]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=4wfp 4wfp]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4ZAH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ZAH FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4zah]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=4wfp 4wfp]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4ZAH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4ZAH FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=T5K:[[(2R,3S,5R)-5-[5-METHYL-2,4-BIS(OXIDANYLIDENE)PYRIMIDIN-1-YL]-3-OXIDANYL-OXOLAN-2-YL]METHOXY-OXIDANYL-PHOSPHORYL]+[(2R,3R,4S,5R,6R)-6-METHYL-5-[(E)-[2-METHYL-3-OXIDANYL-5-(PHOSPHONOOXYMETHYL)PYRIDIN-4-YL]METHYLIDENEAMINO]-3,4-BIS(OXIDANYL)OXAN-2-YL]+HYDROGEN+PHOSPHATE'>T5K</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.24&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4piw|4piw]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=T5K:[[(2R,3S,5R)-5-[5-METHYL-2,4-BIS(OXIDANYLIDENE)PYRIMIDIN-1-YL]-3-OXIDANYL-OXOLAN-2-YL]METHOXY-OXIDANYL-PHOSPHORYL]+[(2R,3R,4S,5R,6R)-6-METHYL-5-[(E)-[2-METHYL-3-OXIDANYL-5-(PHOSPHONOOXYMETHYL)PYRIDIN-4-YL]METHYLIDENEAMINO]-3,4-BIS(OXIDANYL)OXAN-2-YL]+HYDROGEN+PHOSPHATE'>T5K</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">rffA, wecE, yifI, b3791, JW3765 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83333 ECOLI])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4zah FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zah OCA], [https://pdbe.org/4zah PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4zah RCSB], [https://www.ebi.ac.uk/pdbsum/4zah PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4zah ProSAT]</span></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/dTDP-4-amino-4,6-dideoxygalactose_transaminase dTDP-4-amino-4,6-dideoxygalactose transaminase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.6.1.59 2.6.1.59] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4zah FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zah OCA], [http://pdbe.org/4zah PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4zah RCSB], [http://www.ebi.ac.uk/pdbsum/4zah PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4zah ProSAT]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/RFFA_ECOLI RFFA_ECOLI]] Sugar aminotransferase involved in enterobacterial common antigen (ECA) elongation.
+
[https://www.uniprot.org/uniprot/WECE_ECOLI WECE_ECOLI] Catalyzes the synthesis of dTDP-4-amino-4,6-dideoxy-D-galactose (dTDP-Fuc4N) from dTDP-4-keto-6-deoxy-D-glucose (dTDP-D-Glc4O) and L-glutamate.[HAMAP-Rule:MF_02026]<ref>PMID:15271350</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 25: Line 23:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Ecoli]]
+
[[Category: Escherichia coli K-12]]
-
[[Category: DTDP-4-amino-4,6-dideoxygalactose transaminase]]
+
[[Category: Large Structures]]
-
[[Category: Cao, H]]
+
[[Category: Cao H]]
-
[[Category: Miller, M D]]
+
[[Category: Miller MD]]
-
[[Category: NatPro, Enzyme Discovery for Natural Product Biosynthesis]]
+
[[Category: Phillips Jr GN]]
-
[[Category: Phillips, G N]]
+
[[Category: Singh S]]
-
[[Category: Singh, S]]
+
[[Category: Thorson JS]]
-
[[Category: Thorson, J S]]
+
[[Category: Wang F]]
-
[[Category: Wang, F]]
+
[[Category: Xu W]]
-
[[Category: Xu, W]]
+
-
[[Category: Enzyme discovery for natural product biosynthesis]]
+
-
[[Category: Natpro]]
+
-
[[Category: PSI, Protein structure initiative]]
+
-
[[Category: Psi-biology]]
+
-
[[Category: Structural genomic]]
+
-
[[Category: Sugar aminotransferase]]
+
-
[[Category: Transferase]]
+

Current revision

Crystal structure of sugar aminotransferase WecE with External Aldimine VII from Escherichia coli K-12

PDB ID 4zah

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools