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| <StructureSection load='4zah' size='340' side='right'caption='[[4zah]], [[Resolution|resolution]] 2.24Å' scene=''> | | <StructureSection load='4zah' size='340' side='right'caption='[[4zah]], [[Resolution|resolution]] 2.24Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[4zah]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Ecoli Ecoli]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=4wfp 4wfp]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4ZAH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ZAH FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4zah]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=4wfp 4wfp]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4ZAH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4ZAH FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=T5K:[[(2R,3S,5R)-5-[5-METHYL-2,4-BIS(OXIDANYLIDENE)PYRIMIDIN-1-YL]-3-OXIDANYL-OXOLAN-2-YL]METHOXY-OXIDANYL-PHOSPHORYL]+[(2R,3R,4S,5R,6R)-6-METHYL-5-[(E)-[2-METHYL-3-OXIDANYL-5-(PHOSPHONOOXYMETHYL)PYRIDIN-4-YL]METHYLIDENEAMINO]-3,4-BIS(OXIDANYL)OXAN-2-YL]+HYDROGEN+PHOSPHATE'>T5K</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.24Å</td></tr> |
- | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4piw|4piw]]</td></tr>
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=T5K:[[(2R,3S,5R)-5-[5-METHYL-2,4-BIS(OXIDANYLIDENE)PYRIMIDIN-1-YL]-3-OXIDANYL-OXOLAN-2-YL]METHOXY-OXIDANYL-PHOSPHORYL]+[(2R,3R,4S,5R,6R)-6-METHYL-5-[(E)-[2-METHYL-3-OXIDANYL-5-(PHOSPHONOOXYMETHYL)PYRIDIN-4-YL]METHYLIDENEAMINO]-3,4-BIS(OXIDANYL)OXAN-2-YL]+HYDROGEN+PHOSPHATE'>T5K</scene></td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">rffA, wecE, yifI, b3791, JW3765 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83333 ECOLI])</td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4zah FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zah OCA], [https://pdbe.org/4zah PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4zah RCSB], [https://www.ebi.ac.uk/pdbsum/4zah PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4zah ProSAT]</span></td></tr> |
- | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/dTDP-4-amino-4,6-dideoxygalactose_transaminase dTDP-4-amino-4,6-dideoxygalactose transaminase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.6.1.59 2.6.1.59] </span></td></tr>
| + | |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4zah FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zah OCA], [http://pdbe.org/4zah PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4zah RCSB], [http://www.ebi.ac.uk/pdbsum/4zah PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4zah ProSAT]</span></td></tr> | + | |
| </table> | | </table> |
| == Function == | | == Function == |
- | [[http://www.uniprot.org/uniprot/RFFA_ECOLI RFFA_ECOLI]] Sugar aminotransferase involved in enterobacterial common antigen (ECA) elongation. | + | [https://www.uniprot.org/uniprot/WECE_ECOLI WECE_ECOLI] Catalyzes the synthesis of dTDP-4-amino-4,6-dideoxy-D-galactose (dTDP-Fuc4N) from dTDP-4-keto-6-deoxy-D-glucose (dTDP-D-Glc4O) and L-glutamate.[HAMAP-Rule:MF_02026]<ref>PMID:15271350</ref> |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Ecoli]] | + | [[Category: Escherichia coli K-12]] |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: DTDP-4-amino-4,6-dideoxygalactose transaminase]]
| + | [[Category: Cao H]] |
- | [[Category: Cao, H]] | + | [[Category: Miller MD]] |
- | [[Category: Miller, M D]] | + | [[Category: Phillips Jr GN]] |
- | [[Category: NatPro, Enzyme Discovery for Natural Product Biosynthesis]]
| + | [[Category: Singh S]] |
- | [[Category: Phillips, G N]] | + | [[Category: Thorson JS]] |
- | [[Category: Singh, S]] | + | [[Category: Wang F]] |
- | [[Category: Thorson, J S]] | + | [[Category: Xu W]] |
- | [[Category: Wang, F]] | + | |
- | [[Category: Xu, W]] | + | |
- | [[Category: Enzyme discovery for natural product biosynthesis]]
| + | |
- | [[Category: Natpro]]
| + | |
- | [[Category: PSI, Protein structure initiative]]
| + | |
- | [[Category: Psi-biology]]
| + | |
- | [[Category: Structural genomic]]
| + | |
- | [[Category: Sugar aminotransferase]]
| + | |
- | [[Category: Transferase]]
| + | |
| Structural highlights
Function
WECE_ECOLI Catalyzes the synthesis of dTDP-4-amino-4,6-dideoxy-D-galactose (dTDP-Fuc4N) from dTDP-4-keto-6-deoxy-D-glucose (dTDP-D-Glc4O) and L-glutamate.[HAMAP-Rule:MF_02026][1]
Publication Abstract from PubMed
Sugar aminotransferases (SATs) are an important class of tailoring enzymes that catalyze the 5'-pyridoxal phosphate (PLP)-dependent stereo- and regio- specific installation of an amino group from an amino acid donor (typically L-Glu or L-Gln) to a corresponding ketosugar nucleotide acceptor. Herein we report the strategic structural study of two homologous C4 SATs (Micromonospora echinospora CalS13 and Escherichia coli WecE) that utilize identical substrates but differ in their stereochemistry of aminotransfer. This study reveals for the first time a new mode of SAT sugar nucleotide binding and, in conjunction with previously reported SAT structural studies, provides the basis from which to propose a universal model for SAT stereo- and regiochemical control of amine installation. Specifically, the universal model put forth highlights catalytic divergence to derive solely from distinctions within nucleotide sugar orientation upon binding within a relatively fixed SAT active site where the available ligand bound structures of the three out of four representative C3 and C4 SAT examples provide a basis for the overall model. Importantly, this study presents a new predictive model to support SAT functional annotation, biochemical study and rational engineering.
The structural basis for the stereochemical control of amine installation in nucleotide sugar aminotransferases.,Wang F, Singh S, Xu W, Helmich KF, Miller MD, Cao H, Bingman CA, Thorson JS, Phillips GN ACS Chem Biol. 2015 May 29. PMID:26023720[2]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Hwang BY, Lee HJ, Yang YH, Joo HS, Kim BG. Characterization and investigation of substrate specificity of the sugar aminotransferase WecE from E. coli K12. Chem Biol. 2004 Jul;11(7):915-25. doi: 10.1016/j.chembiol.2004.04.015. PMID:15271350 doi:http://dx.doi.org/10.1016/j.chembiol.2004.04.015
- ↑ Wang F, Singh S, Xu W, Helmich KF, Miller MD, Cao H, Bingman CA, Thorson JS, Phillips GN. The structural basis for the stereochemical control of amine installation in nucleotide sugar aminotransferases. ACS Chem Biol. 2015 May 29. PMID:26023720 doi:http://dx.doi.org/10.1021/acschembio.5b00244
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