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4zo2

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'''Unreleased structure'''
 
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The entry 4zo2 is ON HOLD until Paper Publication
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==AidC, a Dizinc Quorum-Quenching Lactonase==
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<StructureSection load='4zo2' size='340' side='right'caption='[[4zo2]], [[Resolution|resolution]] 1.09&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[4zo2]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Chryseobacterium_sp._StRB126 Chryseobacterium sp. StRB126]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4ZO2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4ZO2 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.09&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4zo2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zo2 OCA], [https://pdbe.org/4zo2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4zo2 RCSB], [https://www.ebi.ac.uk/pdbsum/4zo2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4zo2 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/I7HB71_9FLAO I7HB71_9FLAO]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Quorum-quenching catalysts are of interest for potential application as biochemical tools for interrogating interbacterial communication pathways, as antibiofouling agents, and as anti-infective agents in plants and animals. Herein, the structure and function of AidC, an N-acyl-l-homoserine lactone (AHL) lactonase from Chryseobacterium, is characterized. Steady-state kinetics show that zinc-supplemented AidC is the most efficient wild-type quorum-quenching enzymes characterized to date, with a kcat/KM value of approximately 2 x 106 M-1 s-1 for N-heptanoyl-l-homoserine lactone. The enzyme has stricter substrate selectivity and significantly lower KM values (ca. 50 muM for preferred substrates) compared to those of typical AHL lactonases (ca. &gt;1 mM). X-ray crystal structures of AidC alone and with the product N-hexanoyl-l-homoserine were determined at resolutions of 1.09 and 1.67 A, respectively. Each structure displays as a dimer, and dimeric oligiomerization was also observed in solution by size-exclusion chromatography coupled with multiangle light scattering. The structures reveal two atypical features as compared to previously characterized AHL lactonases: a "kinked" alpha-helix that forms part of a closed binding pocket that provides affinity and enforces selectivity for AHL substrates and an active-site His substitution that is usually found in a homologous family of phosphodiesterases. Implications for the catalytic mechanism of AHL lactonases are discussed.
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Authors: Mascarenhas, R., Thomas, P.W., Wu, C.-X., Nocek, B.P., Hoang, Q., Fast, W., Liu, D.
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Structural and Biochemical Characterization of AidC, a Quorum-Quenching Lactonase with Atypical Selectivity.,Mascarenhas R, Thomas PW, Wu CX, Nocek BP, Hoang QQ, Liu D, Fast W Biochemistry. 2015 Jul 8. PMID:26115006<ref>PMID:26115006</ref>
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Description: AidC, a Dizinc Quorum-Quenching Lactonase
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Nocek, B.P]]
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<div class="pdbe-citations 4zo2" style="background-color:#fffaf0;"></div>
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[[Category: Hoang, Q]]
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== References ==
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[[Category: Fast, W]]
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<references/>
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[[Category: Wu, C.-X]]
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__TOC__
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[[Category: Thomas, P.W]]
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</StructureSection>
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[[Category: Liu, D]]
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[[Category: Chryseobacterium sp. StRB126]]
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[[Category: Mascarenhas, R]]
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[[Category: Large Structures]]
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[[Category: Fast W]]
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[[Category: Hoang Q]]
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[[Category: Liu D]]
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[[Category: Mascarenhas R]]
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[[Category: Nocek BP]]
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[[Category: Thomas PW]]
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[[Category: Wu C-X]]

Current revision

AidC, a Dizinc Quorum-Quenching Lactonase

PDB ID 4zo2

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