This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4zy2

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:26, 27 September 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Large structure}}
+
 
==X-ray crystal structure of PfA-M17 in complex with hydroxamic acid-based inhibitor 10o==
==X-ray crystal structure of PfA-M17 in complex with hydroxamic acid-based inhibitor 10o==
-
<StructureSection load='4zy2' size='340' side='right' caption='[[4zy2]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
+
<StructureSection load='4zy2' size='340' side='right'caption='[[4zy2]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4zy2]] is a 12 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4ZY2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ZY2 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4zy2]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Plasmodium_falciparum_FcB1/Columbia Plasmodium falciparum FcB1/Columbia]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4ZY2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4ZY2 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=1PE:PENTAETHYLENE+GLYCOL'>1PE</scene>, <scene name='pdbligand=4TL:N-[(1R)-2-(HYDROXYAMINO)-2-OXO-1-(3,4,5-TRIFLUOROBIPHENYL-4-YL)ETHYL]-2,2-DIMETHYLPROPANAMIDE'>4TL</scene>, <scene name='pdbligand=CO3:CARBONATE+ION'>CO3</scene>, <scene name='pdbligand=DMS:DIMETHYL+SULFOXIDE'>DMS</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3kqz|3kqz]], [[4zx8|4zx8]], [[4zx9|4zx9]], [[4zy0|4zy0]], [[4zy1|4zy1]], [[4zyq|4zyq]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=1PE:PENTAETHYLENE+GLYCOL'>1PE</scene>, <scene name='pdbligand=4TL:N-[(1R)-2-(HYDROXYAMINO)-2-OXO-1-(3,4,5-TRIFLUOROBIPHENYL-4-YL)ETHYL]-2,2-DIMETHYLPROPANAMIDE'>4TL</scene>, <scene name='pdbligand=CO3:CARBONATE+ION'>CO3</scene>, <scene name='pdbligand=DMS:DIMETHYL+SULFOXIDE'>DMS</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4zy2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zy2 OCA], [http://pdbe.org/4zy2 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4zy2 RCSB], [http://www.ebi.ac.uk/pdbsum/4zy2 PDBsum]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4zy2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zy2 OCA], [https://pdbe.org/4zy2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4zy2 RCSB], [https://www.ebi.ac.uk/pdbsum/4zy2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4zy2 ProSAT]</span></td></tr>
</table>
</table>
-
{{Large structure}}
+
== Function ==
 +
[https://www.uniprot.org/uniprot/A0A0L7M119_PLAF4 A0A0L7M119_PLAF4]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 22: Line 23:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Drinkwater, N]]
+
[[Category: Large Structures]]
-
[[Category: McGowan, S]]
+
[[Category: Plasmodium falciparum FcB1/Columbia]]
-
[[Category: Hydrolase-hydrolase inhibitor complex]]
+
[[Category: Drinkwater N]]
-
[[Category: Hydroxamic acid]]
+
[[Category: McGowan S]]
-
[[Category: Inhibitor]]
+
-
[[Category: M17 leucyl-aminopeptidase]]
+
-
[[Category: Protease]]
+

Current revision

X-ray crystal structure of PfA-M17 in complex with hydroxamic acid-based inhibitor 10o

PDB ID 4zy2

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools