This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5d1n

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:42, 27 September 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==Crystal structure of the 16S rRNA (adenine(1408)-N(1))-methyltransferase with its reaction by-product SAH from Catenulisporales acidiphilia==
==Crystal structure of the 16S rRNA (adenine(1408)-N(1))-methyltransferase with its reaction by-product SAH from Catenulisporales acidiphilia==
-
<StructureSection load='5d1n' size='340' side='right' caption='[[5d1n]], [[Resolution|resolution]] 2.71&Aring;' scene=''>
+
<StructureSection load='5d1n' size='340' side='right'caption='[[5d1n]], [[Resolution|resolution]] 2.71&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5d1n]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Catad Catad]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5D1N OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5D1N FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5d1n]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Catenulispora_acidiphila_DSM_44928 Catenulispora acidiphila DSM 44928]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5D1N OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5D1N FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SAH:S-ADENOSYL-L-HOMOCYSTEINE'>SAH</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.713&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5d1h|5d1h]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SAH:S-ADENOSYL-L-HOMOCYSTEINE'>SAH</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Caci_9046 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=479433 CATAD])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5d1n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5d1n OCA], [https://pdbe.org/5d1n PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5d1n RCSB], [https://www.ebi.ac.uk/pdbsum/5d1n PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5d1n ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5d1n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5d1n OCA], [http://pdbe.org/5d1n PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5d1n RCSB], [http://www.ebi.ac.uk/pdbsum/5d1n PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5d1n ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/C7Q5P8_CATAD C7Q5P8_CATAD]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 22: Line 23:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Catad]]
+
[[Category: Catenulispora acidiphila DSM 44928]]
-
[[Category: Conn, G L]]
+
[[Category: Large Structures]]
-
[[Category: Witek, M A]]
+
[[Category: Conn GL]]
-
[[Category: Aminoglycoside resistance]]
+
[[Category: Witek MA]]
-
[[Category: Methyltransferase]]
+
-
[[Category: Ribosome]]
+
-
[[Category: Transferase]]
+

Current revision

Crystal structure of the 16S rRNA (adenine(1408)-N(1))-methyltransferase with its reaction by-product SAH from Catenulisporales acidiphilia

PDB ID 5d1n

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/5d1n"
Personal tools