This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5k5p

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "5k5p" [edit=sysop:move=sysop])
Current revision (09:51, 27 September 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
==Crystal structure of Staphylococcal nuclease variant Delta+PHS I72K L103K at cryogenic temperature==
==Crystal structure of Staphylococcal nuclease variant Delta+PHS I72K L103K at cryogenic temperature==
-
<StructureSection load='5k5p' size='340' side='right' caption='[[5k5p]], [[Resolution|resolution]] 1.83&Aring;' scene=''>
+
<StructureSection load='5k5p' size='340' side='right'caption='[[5k5p]], [[Resolution|resolution]] 1.83&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5k5p]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5K5P OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5K5P FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5k5p]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5K5P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5K5P FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=THP:THYMIDINE-3,5-DIPHOSPHATE'>THP</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.83&#8491;</td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Micrococcal_nuclease Micrococcal nuclease], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.31.1 3.1.31.1] </span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=THP:THYMIDINE-3,5-DIPHOSPHATE'>THP</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5k5p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5k5p OCA], [http://pdbe.org/5k5p PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5k5p RCSB], [http://www.ebi.ac.uk/pdbsum/5k5p PDBsum]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5k5p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5k5p OCA], [https://pdbe.org/5k5p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5k5p RCSB], [https://www.ebi.ac.uk/pdbsum/5k5p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5k5p ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/NUC_STAAU NUC_STAAU]] Enzyme that catalyzes the hydrolysis of both DNA and RNA at the 5' position of the phosphodiester bond.
+
[https://www.uniprot.org/uniprot/NUC_STAAU NUC_STAAU] Enzyme that catalyzes the hydrolysis of both DNA and RNA at the 5' position of the phosphodiester bond.
 +
 
 +
==See Also==
 +
*[[Staphylococcal nuclease 3D structures|Staphylococcal nuclease 3D structures]]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Micrococcal nuclease]]
+
[[Category: Large Structures]]
-
[[Category: E., B Garcia-Moreno]]
+
[[Category: Staphylococcus aureus]]
-
[[Category: Schlessman, J L]]
+
[[Category: Garcia-Moreno E B]]
-
[[Category: Sorenson, J L]]
+
[[Category: Schlessman JL]]
-
[[Category: Hydrolase]]
+
[[Category: Sorenson JL]]
-
[[Category: Hyperstable]]
+
-
[[Category: Ionizable group]]
+
-
[[Category: Nuclease]]
+
-
[[Category: Pdtp]]
+
-
[[Category: Ph switch]]
+

Current revision

Crystal structure of Staphylococcal nuclease variant Delta+PHS I72K L103K at cryogenic temperature

PDB ID 5k5p

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools