5kdg

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(New page: '''Unreleased structure''' The entry 5kdg is ON HOLD Authors: Kozlov, G., Xu, C., Wong, K., Gehring, K., Cygler, M., Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI) D...)
Current revision (09:58, 27 September 2023) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 5kdg is ON HOLD
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==Crystal Structure of Salmonella Typhimurium Effector GtgE==
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<StructureSection load='5kdg' size='340' side='right'caption='[[5kdg]], [[Resolution|resolution]] 1.73&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[5kdg]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_Typhimurium Salmonella enterica subsp. enterica serovar Typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5KDG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5KDG FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.73&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5kdg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5kdg OCA], [https://pdbe.org/5kdg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5kdg RCSB], [https://www.ebi.ac.uk/pdbsum/5kdg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5kdg ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q9XC73_SALTM Q9XC73_SALTM]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Salmonella Typhimurium GtgE is an effector protein contributing to the virulence of this pathogen. It was shown to possess highly selective proteolytic activity against a subset of Rab proteins that helps in evasion of Salmonella-containing vacuole (SCV) fusion with lysosomes. Cys45, His151 and Asp169 are essential for proteolytic activity. The structure of a C-terminal fragment GtgE(79-214) indicated the presence of a papain-like fold. Here, we present the structure of GtgE(17-214) containing the fully assembled active site. The design of a proteolytically active and crystallizable GtgE construct was aided by NMR spectroscopy. The protein indeed displays papain-like fold with an assembled Cys-His-Asp catalytic triad. Like the full-length GtgE, the crystallizable construct showed low activity in vitro for its known substrates, Rab32 and Rab29. NMR titration experiments showed at most very weak binding of GtgE to the peptide encompassing the Rab29 cleavage site. In view of the low in vitro activity and poor substrate binding, we postulate that the function of GtgE in vivo as a proteolytic enzyme is dependent on other factor(s), such as a protein partner or interactions with the SCV membrane, which stimulate(s) GtgE activity in vivo.
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Authors: Kozlov, G., Xu, C., Wong, K., Gehring, K., Cygler, M., Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI)
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Crystal Structure of the Salmonella Typhimurium Effector GtgE.,Xu C, Kozlov G, Wong K, Gehring K, Cygler M PLoS One. 2016 Dec 6;11(12):e0166643. doi: 10.1371/journal.pone.0166643., eCollection 2016. PMID:27923041<ref>PMID:27923041</ref>
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Description: Crystal Structure of Salmonella Typhimurium Effector GtgE
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Montreal-Kingston Bacterial Structural Genomics Initiative (Bsgi)]]
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<div class="pdbe-citations 5kdg" style="background-color:#fffaf0;"></div>
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[[Category: Cygler, M]]
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== References ==
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[[Category: Wong, K]]
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<references/>
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[[Category: Xu, C]]
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__TOC__
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[[Category: Kozlov, G]]
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</StructureSection>
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[[Category: Gehring, K]]
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[[Category: Large Structures]]
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[[Category: Salmonella enterica subsp. enterica serovar Typhimurium]]
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[[Category: Cygler M]]
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[[Category: Gehring K]]
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[[Category: Kozlov G]]
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[[Category: Wong K]]
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[[Category: Xu C]]

Current revision

Crystal Structure of Salmonella Typhimurium Effector GtgE

PDB ID 5kdg

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