This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5k4v

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:39, 27 September 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='5k4v' size='340' side='right'caption='[[5k4v]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
<StructureSection load='5k4v' size='340' side='right'caption='[[5k4v]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5k4v]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Trypanosoma_(trypanozoon)_brucei Trypanosoma (trypanozoon) brucei]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5K4V OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5K4V FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5k4v]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Trypanosoma_brucei Trypanosoma brucei]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5K4V OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5K4V FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/L-threonine_3-dehydrogenase L-threonine 3-dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.103 1.1.1.103] </span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5k4v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5k4v OCA], [http://pdbe.org/5k4v PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5k4v RCSB], [http://www.ebi.ac.uk/pdbsum/5k4v PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5k4v ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5k4v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5k4v OCA], [https://pdbe.org/5k4v PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5k4v RCSB], [https://www.ebi.ac.uk/pdbsum/5k4v PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5k4v ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q7YW97_9TRYP Q7YW97_9TRYP]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 21: Line 23:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: L-threonine 3-dehydrogenase]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Adjogatse, E A]]
+
[[Category: Trypanosoma brucei]]
-
[[Category: Cooper, J B]]
+
[[Category: Adjogatse EA]]
-
[[Category: Erskine, P T]]
+
[[Category: Cooper JB]]
-
[[Category: Holo]]
+
[[Category: Erskine PT]]
-
[[Category: Oxidoreductase]]
+
-
[[Category: Short-chain dehydrogenase]]
+
-
[[Category: Threonine]]
+

Current revision

Three-dimensional structure of L-threonine 3-dehydrogenase from Trypanosoma brucei bound to NAD+ refined to 2.2 angstroms

PDB ID 5k4v

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools