This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5knb

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:49, 27 September 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==Crystal structure of the 2 ADP-bound V1 complex==
==Crystal structure of the 2 ADP-bound V1 complex==
-
<StructureSection load='5knb' size='340' side='right' caption='[[5knb]], [[Resolution|resolution]] 3.25&Aring;' scene=''>
+
<StructureSection load='5knb' size='340' side='right'caption='[[5knb]], [[Resolution|resolution]] 3.25&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5knb]] is a 8 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5KNB OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5KNB FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5knb]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Enterococcus_hirae_ATCC_9790 Enterococcus hirae ATCC 9790]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5KNB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5KNB FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.251&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5knc|5knc]], [[5knd|5knd]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Sodium-transporting_two-sector_ATPase Sodium-transporting two-sector ATPase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.3.15 3.6.3.15] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5knb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5knb OCA], [https://pdbe.org/5knb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5knb RCSB], [https://www.ebi.ac.uk/pdbsum/5knb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5knb ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5knb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5knb OCA], [http://pdbe.org/5knb PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5knb RCSB], [http://www.ebi.ac.uk/pdbsum/5knb PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5knb ProSAT]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/NTPG_ENTHA NTPG_ENTHA]] Involved in ATP-driven sodium extrusion. [[http://www.uniprot.org/uniprot/NTPA_ENTHA NTPA_ENTHA]] Involved in ATP-driven sodium extrusion. [[http://www.uniprot.org/uniprot/NTPD_ENTHA NTPD_ENTHA]] Involved in ATP-driven sodium extrusion.<ref>PMID:8157629</ref> [[http://www.uniprot.org/uniprot/NTPB_ENTHA NTPB_ENTHA]] Involved in ATP-driven sodium extrusion.
+
[https://www.uniprot.org/uniprot/NTPA_ENTHA NTPA_ENTHA] Involved in ATP-driven sodium extrusion.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 20: Line 19:
</div>
</div>
<div class="pdbe-citations 5knb" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 5knb" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[ATPase 3D structures|ATPase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Sodium-transporting two-sector ATPase]]
+
[[Category: Enterococcus hirae ATCC 9790]]
-
[[Category: Imai, F L]]
+
[[Category: Large Structures]]
-
[[Category: Ishizuka-Katsura, Y]]
+
[[Category: Imai FL]]
-
[[Category: Kakinuma, Y]]
+
[[Category: Ishizuka-Katsura Y]]
-
[[Category: Maruyama, S]]
+
[[Category: Kakinuma Y]]
-
[[Category: Mizutani, K]]
+
[[Category: Maruyama S]]
-
[[Category: Muneyuki, E]]
+
[[Category: Mizutani K]]
-
[[Category: Murata, T]]
+
[[Category: Muneyuki E]]
-
[[Category: Shimono, K]]
+
[[Category: Murata T]]
-
[[Category: Shirouzu, M]]
+
[[Category: Shimono K]]
-
[[Category: Suzuki, K]]
+
[[Category: Shirouzu M]]
-
[[Category: Yamato, I]]
+
[[Category: Suzuki K]]
-
[[Category: Yokoyama, S]]
+
[[Category: Yamato I]]
-
[[Category: Atp binding]]
+
[[Category: Yokoyama S]]
-
[[Category: Hydrolase]]
+
-
[[Category: P-loop]]
+

Current revision

Crystal structure of the 2 ADP-bound V1 complex

PDB ID 5knb

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools