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5tem

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Current revision (12:58, 4 October 2023) (edit) (undo)
 
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<StructureSection load='5tem' size='340' side='right'caption='[[5tem]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
<StructureSection load='5tem' size='340' side='right'caption='[[5tem]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[5tem]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibvu Vibvu]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5TEM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5TEM FirstGlance]. <br>
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<table><tr><td colspan='2'>[[5tem]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_vulnificus_CMCP6 Vibrio vulnificus CMCP6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5TEM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5TEM FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene>, <scene name='pdbligand=PDC:PYRIDINE-2,6-DICARBOXYLIC+ACID'>PDC</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[5tek|5tek]], [[5ten|5ten]]</div></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene>, <scene name='pdbligand=PDC:PYRIDINE-2,6-DICARBOXYLIC+ACID'>PDC</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">dapB, VV1_0567 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=216895 VIBVU])</td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/4-hydroxy-tetrahydrodipicolinate_reductase 4-hydroxy-tetrahydrodipicolinate reductase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.17.1.8 1.17.1.8] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5tem FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5tem OCA], [https://pdbe.org/5tem PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5tem RCSB], [https://www.ebi.ac.uk/pdbsum/5tem PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5tem ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5tem FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5tem OCA], [https://pdbe.org/5tem PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5tem RCSB], [https://www.ebi.ac.uk/pdbsum/5tem PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5tem ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
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[[https://www.uniprot.org/uniprot/DAPB_VIBVU DAPB_VIBVU]] Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate.[HAMAP-Rule:MF_00102]
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[https://www.uniprot.org/uniprot/DAPB_VIBVU DAPB_VIBVU] Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate.[HAMAP-Rule:MF_00102]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: 4-hydroxy-tetrahydrodipicolinate reductase]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Vibvu]]
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[[Category: Vibrio vulnificus CMCP6]]
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[[Category: Arnette, K]]
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[[Category: Arnette K]]
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[[Category: Chruszcz, M]]
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[[Category: Chruszcz M]]
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[[Category: Klapper, V]]
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[[Category: Klapper V]]
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[[Category: Mank, N]]
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[[Category: Mank N]]
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[[Category: Lysine biosynthesis]]
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[[Category: Oxidoreductase]]
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Current revision

Structure of 4-Hydroxy-tetrahydrodipicolinate Reductase from Vibrio vulnificus with 2,6 Pyridine Dicarboxylic and NADH

PDB ID 5tem

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