This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


6b9y

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (14:36, 4 October 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==Trastuzumab Fab v3 in complex with 5-phenyl meditope variant==
==Trastuzumab Fab v3 in complex with 5-phenyl meditope variant==
-
<StructureSection load='6b9y' size='340' side='right' caption='[[6b9y]], [[Resolution|resolution]] 2.14&Aring;' scene=''>
+
<StructureSection load='6b9y' size='340' side='right'caption='[[6b9y]], [[Resolution|resolution]] 2.14&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[6b9y]] is a 5 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6B9Y OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6B9Y FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[6b9y]] is a 5 chain structure with sequence from [https://en.wikipedia.org/wiki/Finegoldia_magna Finegoldia magna], [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens], [https://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6B9Y OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6B9Y FirstGlance]. <br>
-
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.14&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4ioi|4ioi]], [[5u3d|5u3d]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6b9y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6b9y OCA], [http://pdbe.org/6b9y PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6b9y RCSB], [http://www.ebi.ac.uk/pdbsum/6b9y PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6b9y ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6b9y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6b9y OCA], [https://pdbe.org/6b9y PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6b9y RCSB], [https://www.ebi.ac.uk/pdbsum/6b9y PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6b9y ProSAT]</span></td></tr>
</table>
</table>
 +
== Disease ==
 +
[https://www.uniprot.org/uniprot/IGKC_HUMAN IGKC_HUMAN] Defects in IGKC are the cause of immunoglobulin kappa light chain deficiency (IGKCD) [MIM:[https://omim.org/entry/614102 614102]. IGKCD is a disease characterized by the complete absence of immunoglobulin kappa chains.<ref>PMID:3931219</ref>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/IGKC_HUMAN IGKC_HUMAN]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 17: Line 21:
</div>
</div>
<div class="pdbe-citations 6b9y" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 6b9y" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Monoclonal Antibodies 3D structures|Monoclonal Antibodies 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Bzymek, K P]]
+
[[Category: Finegoldia magna]]
-
[[Category: King, J D]]
+
[[Category: Homo sapiens]]
-
[[Category: Williams, J C]]
+
[[Category: Large Structures]]
-
[[Category: Fab]]
+
[[Category: Staphylococcus aureus]]
-
[[Category: Immune system]]
+
[[Category: Synthetic construct]]
-
[[Category: Meditope]]
+
[[Category: Bzymek KP]]
-
[[Category: Monoclonal antibody]]
+
[[Category: King JD]]
 +
[[Category: Williams JC]]

Current revision

Trastuzumab Fab v3 in complex with 5-phenyl meditope variant

PDB ID 6b9y

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools