This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


6c2o

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (14:55, 4 October 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==Crystal structure of HCV NS3/4A protease variant Y56H in complex with danoprevir==
==Crystal structure of HCV NS3/4A protease variant Y56H in complex with danoprevir==
-
<StructureSection load='6c2o' size='340' side='right' caption='[[6c2o]], [[Resolution|resolution]] 1.18&Aring;' scene=''>
+
<StructureSection load='6c2o' size='340' side='right'caption='[[6c2o]], [[Resolution|resolution]] 1.18&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[6c2o]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/9hepc 9hepc]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6C2O OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6C2O FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[6c2o]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Hepacivirus_C Hepacivirus C]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6C2O OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6C2O FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=TSV:(2R,6S,12Z,13AS,14AR,16AS)-6-[(TERT-BUTOXYCARBONYL)AMINO]-14A-[(CYCLOPROPYLSULFONYL)CARBAMOYL]-5,16-DIOXO-1,2,3,5,6,7,8,9,10,11,13A,14,14A,15,16,16A-HEXADECAHYDROCYCLOPROPA[E]PYRROLO[1,2-A][1,4]DIAZACYCLOPENTADECIN-2-YL+4-FLUORO-2H-ISOINDOLE-2-CARBOXYLATE'>TSV</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.179&#8491;</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6c2o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6c2o OCA], [http://pdbe.org/6c2o PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6c2o RCSB], [http://www.ebi.ac.uk/pdbsum/6c2o PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6c2o ProSAT]</span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=TSV:(2R,6S,12Z,13AS,14AR,16AS)-6-[(TERT-BUTOXYCARBONYL)AMINO]-14A-[(CYCLOPROPYLSULFONYL)CARBAMOYL]-5,16-DIOXO-1,2,3,5,6,7,8,9,10,11,13A,14,14A,15,16,16A-HEXADECAHYDROCYCLOPROPA[E]PYRROLO[1,2-A][1,4]DIAZACYCLOPENTADECIN-2-YL+4-FLUORO-2H-ISOINDOLE-2-CARBOXYLATE'>TSV</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6c2o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6c2o OCA], [https://pdbe.org/6c2o PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6c2o RCSB], [https://www.ebi.ac.uk/pdbsum/6c2o PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6c2o ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/C1KIK8_9HEPC C1KIK8_9HEPC]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Matthew, A N]]
+
[[Category: Hepacivirus C]]
-
[[Category: Schiffer, C A]]
+
[[Category: Large Structures]]
-
[[Category: Drug resistance]]
+
[[Category: Matthew AN]]
-
[[Category: Hepatitis c virus]]
+
[[Category: Schiffer CA]]
-
[[Category: Hydrolase-hydrolase inhibitor complex]]
+
-
[[Category: Ns3/4a protease]]
+
-
[[Category: Protease inhibitor]]
+

Current revision

Crystal structure of HCV NS3/4A protease variant Y56H in complex with danoprevir

PDB ID 6c2o

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools