This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


6c9u

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (14:59, 4 October 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='6c9u' size='340' side='right'caption='[[6c9u]], [[Resolution|resolution]] 2.09&Aring;' scene=''>
<StructureSection load='6c9u' size='340' side='right'caption='[[6c9u]], [[Resolution|resolution]] 2.09&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[6c9u]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/"actinomyces_erythreus"_(sic)_waksman_1923 "actinomyces erythreus" (sic) waksman 1923] and [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6C9U OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6C9U FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[6c9u]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Saccharopolyspora_erythraea Saccharopolyspora erythraea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6C9U OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6C9U FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.09&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CSD:3-SULFINOALANINE'>CSD</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CSD:3-SULFINOALANINE'>CSD</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">eryA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1836 "Actinomyces erythreus" (sic) Waksman 1923])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6c9u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6c9u OCA], [https://pdbe.org/6c9u PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6c9u RCSB], [https://www.ebi.ac.uk/pdbsum/6c9u PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6c9u ProSAT]</span></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/6-deoxyerythronolide-B_synthase 6-deoxyerythronolide-B synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.3.1.94 2.3.1.94] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6c9u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6c9u OCA], [http://pdbe.org/6c9u PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6c9u RCSB], [http://www.ebi.ac.uk/pdbsum/6c9u PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6c9u ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/ERYA2_SACER ERYA2_SACER]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 21: Line 21:
==See Also==
==See Also==
 +
*[[Antibody 3D structures|Antibody 3D structures]]
*[[6-deoxyerythronolide B synthase 3D structures|6-deoxyerythronolide B synthase 3D structures]]
*[[6-deoxyerythronolide B synthase 3D structures|6-deoxyerythronolide B synthase 3D structures]]
== References ==
== References ==
Line 26: Line 27:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: 6-deoxyerythronolide-B synthase]]
+
[[Category: Homo sapiens]]
-
[[Category: Human]]
+
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Deis, L N]]
+
[[Category: Saccharopolyspora erythraea]]
-
[[Category: Khosla, C]]
+
[[Category: Deis LN]]
-
[[Category: Li, X]]
+
[[Category: Khosla C]]
-
[[Category: Mathews, I I]]
+
[[Category: Li X]]
-
[[Category: 6-deoxyerthronolide b synthase]]
+
[[Category: Mathews II]]
-
[[Category: Antibody]]
+
-
[[Category: Deb]]
+
-
[[Category: Fab]]
+
-
[[Category: Phage display]]
+
-
[[Category: Pk]]
+
-
[[Category: Polyketide synthase]]
+
-
[[Category: Transferase-immune system complex]]
+

Current revision

Crystal structure of [KS3][AT3] didomain from module 3 of 6-deoxyerthronolide B synthase in complex with antibody fragment (Fab)

PDB ID 6c9u

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools