5la3

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(New page: '''Unreleased structure''' The entry 5la3 is ON HOLD Authors: Duan, J., Esselborn, J., Hofmann, E., Winkler, M., Happe, T. Description: [FeFe]-hydrogenase CpI from Clostridium pasteuri...)
Current revision (16:12, 4 October 2023) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 5la3 is ON HOLD
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==[FeFe]-hydrogenase CpI from Clostridium pasteurianum, variant E279A==
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<StructureSection load='5la3' size='340' side='right'caption='[[5la3]], [[Resolution|resolution]] 2.29&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[5la3]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Clostridium_pasteurianum Clostridium pasteurianum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LA3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5LA3 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.29&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=402:DICARBONYL[BIS(CYANIDE-KAPPAC)]-MU-(IMINODIMETHANETHIOLATATO-1KAPPAS 2KAPPAS)-MU-(OXOMETHYLIDENE)DIIRON(2+)'>402</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5la3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5la3 OCA], [https://pdbe.org/5la3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5la3 RCSB], [https://www.ebi.ac.uk/pdbsum/5la3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5la3 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/PHF1_CLOPA PHF1_CLOPA]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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H2 turnover at the [FeFe]-hydrogenase cofactor (H-cluster) is assumed to follow a reversible heterolytic mechanism, first yielding a proton and a hydrido-species which again is double-oxidized to release another proton. Three of the four presumed catalytic intermediates (Hox, Hred/Hred and Hsred) were characterized, using various spectroscopic techniques. However, in catalytically active enzyme, the state containing the hydrido-species, which is eponymous for the proposed heterolytic mechanism, has yet only been speculated about. We use different strategies to trap and spectroscopically characterize this transient hydride state (Hhyd) for three wild-type [FeFe]-hydrogenases. Applying a novel set-up for real-time attenuated total-reflection Fourier-transform infrared spectroscopy, we monitor compositional changes in the state-specific infrared signatures of [FeFe]-hydrogenases, varying buffer pH and gas composition. We selectively enrich the equilibrium concentration of Hhyd, applying Le Chatelier's principle by simultaneously increasing substrate and product concentrations (H2/H+). Site-directed manipulation, targeting either the proton-transfer pathway or the adt ligand, significantly enhances Hhyd accumulation independent of pH.
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Authors: Duan, J., Esselborn, J., Hofmann, E., Winkler, M., Happe, T.
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Accumulating the hydride state in the catalytic cycle of [FeFe]-hydrogenases.,Winkler M, Senger M, Duan J, Esselborn J, Wittkamp F, Hofmann E, Apfel UP, Stripp ST, Happe T Nat Commun. 2017 Jul 19;8:16115. doi: 10.1038/ncomms16115. PMID:28722011<ref>PMID:28722011</ref>
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Description: [FeFe]-hydrogenase CpI from Clostridium pasteurianum, variant E279A
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Winkler, M]]
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<div class="pdbe-citations 5la3" style="background-color:#fffaf0;"></div>
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[[Category: Esselborn, J]]
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== References ==
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[[Category: Duan, J]]
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<references/>
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[[Category: Happe, T]]
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__TOC__
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[[Category: Hofmann, E]]
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</StructureSection>
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[[Category: Clostridium pasteurianum]]
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[[Category: Large Structures]]
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[[Category: Duan J]]
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[[Category: Esselborn J]]
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[[Category: Happe T]]
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[[Category: Hofmann E]]
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[[Category: Winkler M]]

Current revision

[FeFe]-hydrogenase CpI from Clostridium pasteurianum, variant E279A

PDB ID 5la3

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