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| ==Structure of the apo 4497 antibody Fab fragment== | | ==Structure of the apo 4497 antibody Fab fragment== |
- | <StructureSection load='6dwc' size='340' side='right' caption='[[6dwc]], [[Resolution|resolution]] 2.27Å' scene=''> | + | <StructureSection load='6dwc' size='340' side='right'caption='[[6dwc]], [[Resolution|resolution]] 2.27Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[6dwc]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6DWC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6DWC FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6dwc]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6DWC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6DWC FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.27Å</td></tr> |
- | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[6dw2|6dw2]], [[6dwa|6dwa]]</td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6dwc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6dwc OCA], [http://pdbe.org/6dwc PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6dwc RCSB], [http://www.ebi.ac.uk/pdbsum/6dwc PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6dwc ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6dwc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6dwc OCA], [https://pdbe.org/6dwc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6dwc RCSB], [https://www.ebi.ac.uk/pdbsum/6dwc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6dwc ProSAT]</span></td></tr> |
| </table> | | </table> |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
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| </div> | | </div> |
| <div class="pdbe-citations 6dwc" style="background-color:#fffaf0;"></div> | | <div class="pdbe-citations 6dwc" style="background-color:#fffaf0;"></div> |
| + | |
| + | ==See Also== |
| + | *[[Antibody 3D structures|Antibody 3D structures]] |
| == References == | | == References == |
| <references/> | | <references/> |
| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Fong, R]] | + | [[Category: Homo sapiens]] |
- | [[Category: Lupardus, P J]] | + | [[Category: Large Structures]] |
- | [[Category: Antibody]] | + | [[Category: Fong R]] |
- | [[Category: Fab]] | + | [[Category: Lupardus PJ]] |
- | [[Category: Immune system]]
| + | |
- | [[Category: Staphylococcus aureus]]
| + | |
- | [[Category: Wall teichoic acid]]
| + | |
- | [[Category: Wta]]
| + | |
| Structural highlights
Publication Abstract from PubMed
Infections caused by methicillin-resistant Staphylococcus aureus (MRSA) are a growing health threat worldwide. Efforts to identify novel antibodies that target S. aureus cell surface antigens are a promising direction in the development of antibiotics that can halt MRSA infection. We biochemically and structurally characterized three patient-derived MRSA-targeting antibodies that bind to wall teichoic acid (WTA), which is a polyanionic surface glycopolymer. In S. aureus, WTA exists in both alpha- and beta-forms, based on the stereochemistry of attachment of a N-acetylglucosamine residue to the repeating phosphoribitol sugar unit. We identified a panel of antibodies cloned from human patients that specifically recognize the alpha or beta form of WTA, and can bind with high affinity to pathogenic wild-type strains of S. aureus bacteria. To investigate how the beta-WTA specific antibodies interact with their target epitope, we determined the X-ray crystal structures of the three beta-WTA specific antibodies, 4462, 4497, and 6078 (Protein Data Bank IDs 6DWI, 6DWA, and 6DW2, respectively), bound to a synthetic WTA epitope. These structures reveal that all three of these antibodies, while utilizing distinct antibody complementarity-determining region sequences and conformations to interact with beta-WTA, fulfill two recognition principles: binding to the beta-GlcNAc pyranose core and triangulation of WTA phosphate residues with polar contacts. These studies reveal the molecular basis for targeting a unique S. aureus cell surface epitope and highlight the power of human patient-based antibody discovery techniques for finding novel pathogen-targeting therapeutics.
Structural investigation of human S. aureus-targeting antibodies that bind wall teichoic acid.,Fong R, Kajihara K, Chen M, Hotzel I, Mariathasan S, Hazenbos WLW, Lupardus PJ MAbs. 2018 Aug 13:1-13. doi: 10.1080/19420862.2018.1501252. PMID:30102105[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Fong R, Kajihara K, Chen M, Hotzel I, Mariathasan S, Hazenbos WLW, Lupardus PJ. Structural investigation of human S. aureus-targeting antibodies that bind wall teichoic acid. MAbs. 2018 Aug 13:1-13. doi: 10.1080/19420862.2018.1501252. PMID:30102105 doi:http://dx.doi.org/10.1080/19420862.2018.1501252
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