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6mcw

From Proteopedia

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Current revision

Crystal structure of the P450 domain of the CYP51-ferredoxin fusion protein from Methylococcus capsulatus, complex with the detergent Anapoe-X-114

Structural highlights

6mcw is a 1 chain structure with sequence from Methylococcus capsulatus str. Bath. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:	X-ray diffraction, Resolution 2.4Å
Ligands:	,
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

Q603T8_METCA

Publication Abstract from PubMed

Sterol biosynthesis, primarily associated with eukaryotic kingdoms of life, occurs as an abbreviated pathway in the bacterium Methylococcus capsulatus. Sterol 14alpha-demethylation is an essential step in this pathway and is catalyzed by cytochrome P450 51 (CYP51). In M. capsulatus the enzyme consists of the P450 domain naturally fused to a ferredoxin domain at the C-terminus (CYP51fx). The structure of M. capsulatus CYP51fx was solved to 2.7 A resolution and is the first structure of a bacterial sterol biosynthetic enzyme. The structure contained one P450 molecule per asymmetric unit with no electron density seen for ferredoxin. We connect this with the requirement of P450 substrate binding in order to activate productive ferredoxin binding. Further, the structure of the P450 domain with bound detergent (which replaced the substrate upon crystallization) was solved to 2.4 A resolution. Comparison of these two structures to the CYP51s from human, fungi and protozoa reveals strict conservation of the overall protein architecture. However, the structure of an "orphan" P450 from non-sterol producing Mycobacterium tuberculosis that also has CYP51 activity reveals marked differences, suggesting that loss of function in vivo might have led to alterations in the structural constraints. Our results are consistent with the idea that eukaryotic and bacterial CYP51s evolved from a common cenancestor and that early eukaryotes may have recruited CYP51 from a bacterial source. The idea is supported by bioinformatic analysis, revealing the presence of CYP51 genes in > 1000 bacteria from 9 different phyla, more than 50 of them being natural CYP51fx fusion proteins.

Concerning P450 evolution: Structural Analyses Support Bacterial Origin of Sterol 14alpha-Demethylases.,Lamb DC, Hargrove TY, Zhao B, Wawrzak Z, Goldstone JV, Nes WD, Kelly SL, Waterman MR, Stegeman JJ, Lepesheva GI Mol Biol Evol. 2020 Oct 8. pii: 5919591. doi: 10.1093/molbev/msaa260. PMID:33031537^[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Lamb DC, Hargrove TY, Zhao B, Wawrzak Z, Goldstone JV, Nes WD, Kelly SL, Waterman MR, Stegeman JJ, Lepesheva GI. Concerning P450 evolution: Structural Analyses Support Bacterial Origin of Sterol 14alpha-Demethylases. Mol Biol Evol. 2020 Oct 8. pii: 5919591. doi: 10.1093/molbev/msaa260. PMID:33031537 doi:http://dx.doi.org/10.1093/molbev/msaa260

1 Structural highlights
2 Function
3 Publication Abstract from PubMed
4 See Also
5 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/6mcw"

@@ Line 3: / Line 3: @@
 <StructureSection load='6mcw' size='340' side='right'caption='[[6mcw]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[6mcw]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Metca Metca]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6MCW OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6MCW FirstGlance]. <br>
+<table><tr><td colspan='2'>[[6mcw]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Methylococcus_capsulatus_str._Bath Methylococcus capsulatus str. Bath]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6MCW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6MCW FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=JDJ:23-[4-(2,4,4-trimethylpentan-2-yl)phenoxy]-3,6,9,12,15,18,21-heptaoxatricosan-1-ol'>JDJ</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">cyp51, MCA2711 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=243233 METCA])</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=JDJ:23-[4-(2,4,4-trimethylpentan-2-yl)phenoxy]-3,6,9,12,15,18,21-heptaoxatricosan-1-ol'>JDJ</scene></td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Sterol_14-demethylase Sterol 14-demethylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.14.13.70 1.14.13.70] </span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6mcw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6mcw OCA], [https://pdbe.org/6mcw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6mcw RCSB], [https://www.ebi.ac.uk/pdbsum/6mcw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6mcw ProSAT]</span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6mcw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6mcw OCA], [http://pdbe.org/6mcw PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6mcw RCSB], [http://www.ebi.ac.uk/pdbsum/6mcw PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6mcw ProSAT]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/Q603T8_METCA Q603T8_METCA]
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 26: / Line 27: @@
 </StructureSection>
 [[Category: Large Structures]]
-[[Category: Metca]]
+[[Category: Methylococcus capsulatus str. Bath]]
-[[Category: Sterol 14-demethylase]]
+[[Category: Hargrove T]]
-[[Category: Hargrove, T]]
+[[Category: Lamb DC]]
-[[Category: Lamb, D C]]
+[[Category: Lepesheva GI]]
-[[Category: Lepesheva, G I]]
+[[Category: Wawrzak Z]]
-[[Category: Wawrzak, Z]]
-[[Category: Cyp51]]
-[[Category: Cytochrome p450 fold]]
-[[Category: Heme]]
-[[Category: Oxidoreductase]]
-[[Category: Sterol biosynthesis]]

6mcw

From Proteopedia

Current revision

Crystal structure of the P450 domain of the CYP51-ferredoxin fusion protein from Methylococcus capsulatus, complex with the detergent Anapoe-X-114

Structural highlights

Function

Publication Abstract from PubMed

See Also

References

Contents

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