This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


6n2f

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:43, 11 October 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='6n2f' size='340' side='right'caption='[[6n2f]], [[Resolution|resolution]] 2.27&Aring;' scene=''>
<StructureSection load='6n2f' size='340' side='right'caption='[[6n2f]], [[Resolution|resolution]] 2.27&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[6n2f]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Arath Arath]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6N2F OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6N2F FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[6n2f]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6N2F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6N2F FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=LYS:LYSINE'>LYS</scene>, <scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.27&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[6n2a|6n2a]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=LYS:LYSINE'>LYS</scene>, <scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">LYSA2, diDi 18A-1f, At5g11880, F14F18.50 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ARATH])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6n2f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6n2f OCA], [https://pdbe.org/6n2f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6n2f RCSB], [https://www.ebi.ac.uk/pdbsum/6n2f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6n2f ProSAT]</span></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Diaminopimelate_decarboxylase Diaminopimelate decarboxylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.1.20 4.1.1.20] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6n2f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6n2f OCA], [http://pdbe.org/6n2f PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6n2f RCSB], [http://www.ebi.ac.uk/pdbsum/6n2f PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6n2f ProSAT]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/DCDA2_ARATH DCDA2_ARATH]] Specifically catalyzes the decarboxylation of meso-diaminopimelate (meso-DAP) to L-lysine.<ref>PMID:15652176</ref>
+
[https://www.uniprot.org/uniprot/DCDA2_ARATH DCDA2_ARATH] Specifically catalyzes the decarboxylation of meso-diaminopimelate (meso-DAP) to L-lysine.<ref>PMID:15652176</ref>
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Arath]]
+
[[Category: Arabidopsis thaliana]]
-
[[Category: Diaminopimelate decarboxylase]]
+
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Crowther, J M]]
+
[[Category: Crowther JM]]
-
[[Category: Dobson, R C.J]]
+
[[Category: Dobson RCJ]]
-
[[Category: Decarboxylase]]
+
-
[[Category: Lyase]]
+
-
[[Category: Lysine]]
+
-
[[Category: Meso-diaminopimelate]]
+
-
[[Category: Plp]]
+

Current revision

Meso-Diaminopimelate Decarboxylase from Arabidopsis thaliana (Isoform 2)

PDB ID 6n2f

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools