This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


6vgc

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:12, 11 October 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='6vgc' size='340' side='right'caption='[[6vgc]], [[Resolution|resolution]] 2.37&Aring;' scene=''>
<StructureSection load='6vgc' size='340' side='right'caption='[[6vgc]], [[Resolution|resolution]] 2.37&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[6vgc]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6VGC OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6VGC FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[6vgc]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6VGC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6VGC FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BOG:B-OCTYLGLUCOSIDE'>BOG</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=QY1:(2R)-cyclopentyl{4-[(quinolin-2-yl)methoxy]phenyl}acetic+acid'>QY1</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.37&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ALOX5AP, FLAP ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BOG:B-OCTYLGLUCOSIDE'>BOG</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=QY1:(2R)-cyclopentyl{4-[(quinolin-2-yl)methoxy]phenyl}acetic+acid'>QY1</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6vgc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6vgc OCA], [http://pdbe.org/6vgc PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6vgc RCSB], [http://www.ebi.ac.uk/pdbsum/6vgc PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6vgc ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6vgc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6vgc OCA], [https://pdbe.org/6vgc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6vgc RCSB], [https://www.ebi.ac.uk/pdbsum/6vgc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6vgc ProSAT]</span></td></tr>
</table>
</table>
== Disease ==
== Disease ==
-
[[http://www.uniprot.org/uniprot/AL5AP_HUMAN AL5AP_HUMAN]] Genetic variations in ALOX5AP may be a cause of susceptibility to ischemic stroke (ISCHSTR) [MIM:[http://omim.org/entry/601367 601367]]; also known as cerebrovascular accident or cerebral infarction. A stroke is an acute neurologic event leading to death of neural tissue of the brain and resulting in loss of motor, sensory and/or cognitive function. Ischemic strokes, resulting from vascular occlusion, is considered to be a highly complex disease consisting of a group of heterogeneous disorders with multiple genetic and environmental risk factors.<ref>PMID:14770184</ref> Note=Genetic variations in ALOX5AP may be associated with susceptibility to myocardial infarction. Involvement in myocardial infarction is however unclear: according to some authors (PubMed:14770184), a 4-SNP haplotype in ALOX5AP confers risk of myocardial infarction, while according to other (PubMed:17304054) ALOX5AP is not implicated in this condition.
+
[https://www.uniprot.org/uniprot/AL5AP_HUMAN AL5AP_HUMAN] Genetic variations in ALOX5AP may be a cause of susceptibility to ischemic stroke (ISCHSTR) [MIM:[https://omim.org/entry/601367 601367]; also known as cerebrovascular accident or cerebral infarction. A stroke is an acute neurologic event leading to death of neural tissue of the brain and resulting in loss of motor, sensory and/or cognitive function. Ischemic strokes, resulting from vascular occlusion, is considered to be a highly complex disease consisting of a group of heterogeneous disorders with multiple genetic and environmental risk factors.<ref>PMID:14770184</ref> Note=Genetic variations in ALOX5AP may be associated with susceptibility to myocardial infarction. Involvement in myocardial infarction is however unclear: according to some authors (PubMed:14770184), a 4-SNP haplotype in ALOX5AP confers risk of myocardial infarction, while according to other (PubMed:17304054) ALOX5AP is not implicated in this condition.
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/AL5AP_HUMAN AL5AP_HUMAN]] Required for leukotriene biosynthesis by ALOX5 (5-lipoxygenase). Anchors ALOX5 to the membrane. Binds arachidonic acid, and could play an essential role in the transfer of arachidonic acid to ALOX5. Binds to MK-886, a compound that blocks the biosynthesis of leukotrienes.<ref>PMID:2300173</ref> <ref>PMID:8440384</ref>
+
[https://www.uniprot.org/uniprot/AL5AP_HUMAN AL5AP_HUMAN] Required for leukotriene biosynthesis by ALOX5 (5-lipoxygenase). Anchors ALOX5 to the membrane. Binds arachidonic acid, and could play an essential role in the transfer of arachidonic acid to ALOX5. Binds to MK-886, a compound that blocks the biosynthesis of leukotrienes.<ref>PMID:2300173</ref> <ref>PMID:8440384</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 25: Line 25:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Human]]
+
[[Category: Homo sapiens]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Antonysamy, S]]
+
[[Category: Antonysamy S]]
-
[[Category: Aznavour, K]]
+
[[Category: Aznavour K]]
-
[[Category: Chandrasekhar, S]]
+
[[Category: Chandrasekhar S]]
-
[[Category: Condon, B]]
+
[[Category: Condon B]]
-
[[Category: Gooding, K]]
+
[[Category: Gooding K]]
-
[[Category: Harvey, A]]
+
[[Category: Harvey A]]
-
[[Category: Hickey, M J]]
+
[[Category: Hickey MJ]]
-
[[Category: Ho, J D]]
+
[[Category: Ho JD]]
-
[[Category: Hughes, N E]]
+
[[Category: Hughes NE]]
-
[[Category: Kahl, S D]]
+
[[Category: Kahl SD]]
-
[[Category: Lee, M R]]
+
[[Category: Lee MR]]
-
[[Category: Luz, J G]]
+
[[Category: Luz JG]]
-
[[Category: Maletic, M]]
+
[[Category: Maletic M]]
-
[[Category: Norman, B H]]
+
[[Category: Norman BH]]
-
[[Category: Park, J S]]
+
[[Category: Park JS]]
-
[[Category: Rauch, C T]]
+
[[Category: Rauch CT]]
-
[[Category: Sloan, A V]]
+
[[Category: Sloan AV]]
-
[[Category: Yu, X P]]
+
[[Category: Yu XP]]
-
[[Category: Zhang, A]]
+
[[Category: Zhang A]]
-
[[Category: 5-lipoxygenase activating protein]]
+
-
[[Category: Dg-031]]
+
-
[[Category: Flap]]
+
-
[[Category: Membrane protein]]
+

Current revision

Crystal Structures of FLAP bound to DG-031

PDB ID 6vgc

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools