This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


6vgs

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:12, 11 October 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='6vgs' size='340' side='right'caption='[[6vgs]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
<StructureSection load='6vgs' size='340' side='right'caption='[[6vgs]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[6vgs]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/"lactococcus_lactis_subsp._diacitilactis_(sic)"_(garvie_and_farrow_1982)_schleifer_et_al._1986 "lactococcus lactis subsp. diacitilactis (sic)" (garvie and farrow 1982) schleifer et al. 1986]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6VGS OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6VGS FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[6vgs]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Lactococcus_lactis_subsp._lactis Lactococcus lactis subsp. lactis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6VGS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6VGS FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=TPP:THIAMINE+DIPHOSPHATE'>TPP</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">JCM5805K_1329 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1360 "Lactococcus lactis subsp. diacitilactis (sic)" (Garvie and Farrow 1982) Schleifer et al. 1986])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=TPP:THIAMINE+DIPHOSPHATE'>TPP</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6vgs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6vgs OCA], [http://pdbe.org/6vgs PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6vgs RCSB], [http://www.ebi.ac.uk/pdbsum/6vgs PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6vgs ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6vgs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6vgs OCA], [https://pdbe.org/6vgs PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6vgs RCSB], [https://www.ebi.ac.uk/pdbsum/6vgs PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6vgs ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/A0A0B8QZ66_LACLL A0A0B8QZ66_LACLL]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 21: Line 23:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
 +
[[Category: Lactococcus lactis subsp. lactis]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Bowie, J U]]
+
[[Category: Bowie JU]]
-
[[Category: Chan, S]]
+
[[Category: Chan S]]
-
[[Category: Korman, T P]]
+
[[Category: Korman TP]]
-
[[Category: Sawaya, M R]]
+
[[Category: Sawaya MR]]
-
[[Category: Lyase]]
+
-
[[Category: Thiamine pyrophosphate]]
+

Current revision

Alpha-ketoisovalerate decarboxylase (KivD) from Lactococcus lactis, thermostable mutant

PDB ID 6vgs

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools