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3aym

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<StructureSection load='3aym' size='340' side='right'caption='[[3aym]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
<StructureSection load='3aym' size='340' side='right'caption='[[3aym]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[3aym]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Japanese_flying_squid Japanese flying squid]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AYM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3AYM FirstGlance]. <br>
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<table><tr><td colspan='2'>[[3aym]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Todarodes_pacificus Todarodes pacificus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AYM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3AYM FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BOG:B-OCTYLGLUCOSIDE'>BOG</scene>, <scene name='pdbligand=PC1:1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE'>PC1</scene>, <scene name='pdbligand=PLM:PALMITIC+ACID'>PLM</scene>, <scene name='pdbligand=RET:RETINAL'>RET</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2z73|2z73]], [[3ayn|3ayn]]</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BOG:B-OCTYLGLUCOSIDE'>BOG</scene>, <scene name='pdbligand=PC1:1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE'>PC1</scene>, <scene name='pdbligand=PLM:PALMITIC+ACID'>PLM</scene>, <scene name='pdbligand=RET:RETINAL'>RET</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3aym FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3aym OCA], [http://pdbe.org/3aym PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3aym RCSB], [http://www.ebi.ac.uk/pdbsum/3aym PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3aym ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3aym FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3aym OCA], [https://pdbe.org/3aym PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3aym RCSB], [https://www.ebi.ac.uk/pdbsum/3aym PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3aym ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/OPSD_TODPA OPSD_TODPA]] Visual pigments such as rhodopsin and porphyropsin are light-absorbing molecules that mediate vision. Rhodopsin consists of an apoprotein, opsin, covalently linked to 11-cis-retinal. This receptor is coupled to the activation of phospholipase C. Porphyropsin consists of opsin covalently linked to 11-cis 3,4-didehydroretinal.
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[https://www.uniprot.org/uniprot/OPSD_TODPA OPSD_TODPA] Visual pigments such as rhodopsin and porphyropsin are light-absorbing molecules that mediate vision. Rhodopsin consists of an apoprotein, opsin, covalently linked to 11-cis-retinal. This receptor is coupled to the activation of phospholipase C. Porphyropsin consists of opsin covalently linked to 11-cis 3,4-didehydroretinal.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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==See Also==
==See Also==
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*[[Rhodopsin|Rhodopsin]]
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*[[Rhodopsin 3D structures|Rhodopsin 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Japanese flying squid]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Kouyama, T]]
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[[Category: Todarodes pacificus]]
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[[Category: Murakami, M]]
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[[Category: Kouyama T]]
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[[Category: Chromophore]]
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[[Category: Murakami M]]
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[[Category: Glycoprotein]]
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[[Category: Gq-type g-protein]]
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[[Category: Lipoprotein]]
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[[Category: Membrane]]
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[[Category: Phosphorylation]]
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[[Category: Photoreceptor]]
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[[Category: Signaling protein]]
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[[Category: Transmembrane protein]]
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Current revision

Crystal structure of the batho intermediate of squid rhodopsin

PDB ID 3aym

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