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Response regulator 3D structure

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(New page: == 3D Structures of response regulator == Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} {{#tree:id=OrganizedByTopic|openlevels=0| *Nitrate/nitrite response...)
Current revision (09:39, 11 October 2023) (edit) (undo)
 
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Line 24: Line 24:
**[[1p2f]] – TmDrrB<br/ >
**[[1p2f]] – TmDrrB<br/ >
**[[3nns]] - TmDrrB receiver domain + BeF3<BR/ >
**[[3nns]] - TmDrrB receiver domain + BeF3<BR/ >
-
**[[1nxo]], [[1nxp]], [[1nxs]], [[1nxt]], [[1nxv]], [[1nxw]], [[1nxx]] – SpMicArec receiver domain – ''Streptococcus pneumonia''<br/ >
+
**[[1nxo]], [[1nxp]], [[1nxs]], [[1nxt]], [[1nxv]], [[1nxw]], [[1nxx]], [[6ebr]] – SpMicArec receiver domain – ''Streptococcus pneumonia''<br/ >
**[[2gwr]] - MtMtrA – ''Mycobacterium tuberculosis''<br/ >
**[[2gwr]] - MtMtrA – ''Mycobacterium tuberculosis''<br/ >
**[[2hwv]] – EfVicR C terminal – ''Enterococcus faecalis''<br/ >
**[[2hwv]] – EfVicR C terminal – ''Enterococcus faecalis''<br/ >
Line 30: Line 30:
**[[2qsj]] – LuxR – ''Silicibbacter pomeroyi''<br/ >
**[[2qsj]] – LuxR – ''Silicibbacter pomeroyi''<br/ >
**[[3cnb]], [[3eqz]] – MerR receiver domain – ''Colwellia psychrerythraea''<br/ >
**[[3cnb]], [[3eqz]] – MerR receiver domain – ''Colwellia psychrerythraea''<br/ >
-
**[[2rnj]] – SaVraR VRAR DBD – ''Staphylococcus aureus'' – NMR<br/ >
+
**[[2rnj]] – SaVraR VraR DBD – ''Staphylococcus aureus'' – NMR<br/ >
 +
**[[7ve6]] - SaVraR VraR N-terminal <br />
 +
**[[7ve4]] - SaVraR VraR C-terminal <br />
 +
**[[7ve5]] - SaVraR VraR C-terminal + DNA<br />
**[[2zxj]] - SaWalR WALR DBD<br/ >
**[[2zxj]] - SaWalR WALR DBD<br/ >
**[[4qwq]] - SaSaeR SAER DNA-binding domain<br />
**[[4qwq]] - SaSaeR SAER DNA-binding domain<br />
-
**[[6is4]] – SaSaeR ARLR DNA-binding domain<br />
+
**[[6kyx]], [[6iju]], [[6is4]] – SaSaeR ArlR DNA-binding domain<br />
-
**[[6is1]], [[6is2]], [[6is3]] – SaSaeR ARLR receiver domain 1-122<br />
+
**[[6m8o]] – SaSaeR LytR receiver domain<br />
 +
**[[6is1]], [[6is2]], [[6is3]] – SaSaeR ArlR receiver domain 1-122<br />
**[[4ixa]] – SaeR SAER DNA-binding domain – ''Staphylococcus epidermidis''<br />
**[[4ixa]] – SaeR SAER DNA-binding domain – ''Staphylococcus epidermidis''<br />
**[[4gvp]] – SaVraR<br />
**[[4gvp]] – SaVraR<br />
Line 41: Line 45:
**[[3q9v]] - DrRR C terminal<br />
**[[3q9v]] - DrRR C terminal<br />
**[[3rjp]] - RR DBD – ''Streptococcus pyogenes''<br />
**[[3rjp]] - RR DBD – ''Streptococcus pyogenes''<br />
-
**[[2a9r]] – SpRR N terminal + phosphate + Mg
+
**[[2a9r]] – SpRR N terminal + phosphate + Mg<br />
 +
**[[6lgq]] – EcRR DNA-binding domain + histidine kinase<br />
 +
**[[7e1d]], [[7e1f]], [[7e1h]], [[7e92]] – VpRR VbrR DNA-binding domain – ''Vibrio parahaemolyticus''<br />
 +
**[[7e90]] – VpRR VbrR DNA-binding domain (mutant)<br />
 +
**[[7e1b]] – VpRR VbrR DNA-binding domain + DNA<br />
 +
**[[7kpo]] – RR DBD – ''Vibrio cholerae'' <br />
*Cyanobacterial phytochrome response regulator
*Cyanobacterial phytochrome response regulator
Line 48: Line 57:
**[[1jlk]] – SyRcp1 + Mn<br/ >
**[[1jlk]] – SyRcp1 + Mn<br/ >
**[[1k66]] – ToRcpB – ''Tolypothrix''<br/ >
**[[1k66]] – ToRcpB – ''Tolypothrix''<br/ >
-
**[[1k68]] – ToRcpB
+
**[[1k68]] – ToRcpB<br />
 +
**[[6xvu]] – DrRcp<br />
*Phosphatase synthesis response regulator
*Phosphatase synthesis response regulator
Line 55: Line 65:
**[[2jb9]], [[2jba]] – EcPhoB (mutant) <br/ >
**[[2jb9]], [[2jba]] – EcPhoB (mutant) <br/ >
**[[2pmu]] – MtPhoP DBD
**[[2pmu]] – MtPhoP DBD
 +
 +
*RR aspartate phosphatase
 +
 +
**[[6t3h]] – BsRAP <br />
 +
**[[6t46]] – BsRAP + PHR peptide<br />
*Polar differentiation response regulator
*Polar differentiation response regulator
Line 97: Line 112:
**[[2zwm]] – BsYycF receiver domain<br/ >
**[[2zwm]] – BsYycF receiver domain<br/ >
-
**[[5iuj]], [[5iuk]], [[5iul]], [[5iun]] - BsDesR + DesK<br />
+
**[[5iuj]], [[5iuk]], [[5iul]], [[7ssj]] - BsDesR + DesK<br />
**[[3ulq]] – BsComA DBD + RR aspartate phosphatase<br />
**[[3ulq]] – BsComA DBD + RR aspartate phosphatase<br />
**[[2pkx]] – EcPhoP regulatory domain<br />
**[[2pkx]] – EcPhoP regulatory domain<br />
Line 120: Line 135:
*Chemotaxis response regulator see [[Chemotaxis protein]]
*Chemotaxis response regulator see [[Chemotaxis protein]]
-
*Two-component response regulator
+
*Two-component response regulator; Domains – receiver 1-132; DBD – 148-254; C-terminal 290-404
**[[2lpm]] – SmRR <br />
**[[2lpm]] – SmRR <br />
**[[2m98]] – RR – ''Sinorhizobium meliloti''<br />
**[[2m98]] – RR – ''Sinorhizobium meliloti''<br />
**[[4q7e]] – RR receiver domain – ''Leptospira biflexa''<br />
**[[4q7e]] – RR receiver domain – ''Leptospira biflexa''<br />
-
**[[2qr3]] – RR N terminal – ''Bacteroides fragilis''<br />
+
**[[2qr3]] – RR receiver domain – ''Bacteroides fragilis''<br />
**[[2qzj]] – RR – ''Clostridium difficile''<br />
**[[2qzj]] – RR – ''Clostridium difficile''<br />
**[[3cz5]] – RR – ''Aurantimonas''<br />
**[[3cz5]] – RR – ''Aurantimonas''<br />
Line 131: Line 146:
**[[3ilh]] - RR - ''Cytophaga hutchinsonii''<br />
**[[3ilh]] - RR - ''Cytophaga hutchinsonii''<br />
**[[5brj]] - RR - ''Agrobacterium tumefaciens''<br />
**[[5brj]] - RR - ''Agrobacterium tumefaciens''<br />
-
**[[5uic]] - QseB - ''Francisella tularensis''<br />
 
**[[3lsg]] - RR C-terminal - ''Fusobacterium nucleatum''<br />
**[[3lsg]] - RR C-terminal - ''Fusobacterium nucleatum''<br />
**[[3p01]] - RR - Nostoc<br />
**[[3p01]] - RR - Nostoc<br />
-
**[[6br7]] – RR receiver domain – ''Acinetobacter''<br />
+
**[[6br7]], [[6vbf]] – RR receiver domain – ''Acinetobacter''<br />
**[[5u8m]] – SpRR<br />
**[[5u8m]] – SpRR<br />
**[[5t3y]] – RR - ''Burkholderia multivorans''<br />
**[[5t3y]] – RR - ''Burkholderia multivorans''<br />
**[[4yn8]] – RR – ''Corynebacterium diphtheriae''<br />
**[[4yn8]] – RR – ''Corynebacterium diphtheriae''<br />
 +
**[[6ont]], [[5uic]] – RR receiver domain – ''Francisella tularensis''<br />
 +
**[[6swi]] – GsRR AraT C-terminal<br />
 +
**[[6swb]], [[6swf]] – GsRR AraT receiver domain<br />
 +
**[[6swl]] – GsRR XynC receiver domain <br />
 +
**[[7m0s]] – AbRR PmrA N-terminal –'' Acinetobacter baumannii''<br />
 +
**[[6zwt]] – AbRR OmpR DBD<br />
 +
**[[7vim]] – AbRR EsrB DBD – ''Edwardsiella piscicida<''br />
 +
**[[8e9g]], [[8e9h]] – RR receiver domain in respiratory complex – ''Mycobacterium smegmatis'' – Cryo EM<br />
-
*Fixj RR
+
*Fixj response regulator
**[[5xso]], [[5xt2]] – RR – ''Bradyrhizobium japonicum''<br />
**[[5xso]], [[5xt2]] – RR – ''Bradyrhizobium japonicum''<br />
Line 158: Line 180:
**[[1yio]], [[1zn2]] – StyR – ''Pseudomonas fluorescens''<br/ >
**[[1yio]], [[1zn2]] – StyR – ''Pseudomonas fluorescens''<br/ >
**[[3a0u]], [[3a10]] – TmTrrA + Mg + BeF3<BR/ >
**[[3a0u]], [[3a10]] – TmTrrA + Mg + BeF3<BR/ >
-
**[[2qvg]] – RR – ''Legionella pneumophila''<br/ >
+
**[[2qvg]], [[6sy9]] – RR – ''Legionella pneumophila''<br/ >
**[[3gl9]], [[2qxy]], [[4ja2]] - TmRR<br/ >
**[[3gl9]], [[2qxy]], [[4ja2]] - TmRR<br/ >
**[[4hye]] – SpRR<br />
**[[4hye]] – SpRR<br />
Line 168: Line 190:
**[[3i5b]] – PaWspR GGDEF domain<br/ >
**[[3i5b]] – PaWspR GGDEF domain<br/ >
**[[3i5c]] – PaWspR GGDEF domain/GCN4 leucine zipper<br/ >
**[[3i5c]] – PaWspR GGDEF domain/GCN4 leucine zipper<br/ >
 +
**[[7w9h]] – PaFleR receiver domain<br />
**[[3ljx]] – McMmoQ – ''Methylococcus capsulatus''<br/ >
**[[3ljx]] – McMmoQ – ''Methylococcus capsulatus''<br/ >
**[[3p3q]] – McMmoQ (mutant) <br/ >
**[[3p3q]] – McMmoQ (mutant) <br/ >
**[[3lsg]] – RR C terminal – ''Fusobacterium nucleatum''<br/ >
**[[3lsg]] – RR C terminal – ''Fusobacterium nucleatum''<br/ >
**[[3nhm]] – MxRR<br/ >
**[[3nhm]] – MxRR<br/ >
-
**[[3m6m]] – XcRpfC REC domain + enoyl-CoA hydratase – ''Xanthomonas campestris''<br/ >
+
**[[3m6m]] – XcRpfC receiver domain + enoyl-CoA hydratase – ''Xanthomonas campestris''<br/ >
**[[3qyy]] – XcRR GGDEF domain + GMP<br/ >
**[[3qyy]] – XcRR GGDEF domain + GMP<br/ >
**[[3p01]] – RR residues 134-315 – ''Nostoc''<br/ >
**[[3p01]] – RR residues 134-315 – ''Nostoc''<br/ >
**[[3rqi]] – RR + phosphate + Ca + citrate – ''Burkholderia pseudomallei''<br/ >
**[[3rqi]] – RR + phosphate + Ca + citrate – ''Burkholderia pseudomallei''<br/ >
**[[5tqj]], [[5te9]] – RR - ''Burkholderia phymatum''<br />
**[[5tqj]], [[5te9]] – RR - ''Burkholderia phymatum''<br />
-
**[[5e3j]] – RR Rsta – ''Acinetobacter baumannii''<br />
+
**[[5e3j]] – AbRR RstA<br />
-
**[[4qpj]] – RR Ctra + phosphotransferase – ''Brucella abortus''<br />
+
**[[7cci]] – AbRR AdeR <br />
 +
**[[4qpj]] – RR CtrA + phosphotransferase – ''Brucella abortus''<br />
**[[3kto]] – RR - ''Pseudoalteromonas atlantica''<br />
**[[3kto]] – RR - ''Pseudoalteromonas atlantica''<br />
**[[3t0y]] – CvRR anti-anti-σ domain + anti-σ factor NEPR<br />
**[[3t0y]] – CvRR anti-anti-σ domain + anti-σ factor NEPR<br />
-
**[[2oqr]] – MtRR Regx3 <br />
+
**[[2oqr]] – MtRR RegX3 <br />
-
**[[3sy8]] – PaRR Rocr <br />
+
**[[3sy8]] – PaRR RocR <br />
-
**[[4ml3]], [[4mld]] – SpRR Rec domain (mutant)<br />
+
**[[4ml3]], [[4mld]] – SpRR receiver domain (mutant)<br />
**[[4cbv]] – SpRR (mutant)<br />
**[[4cbv]] – SpRR (mutant)<br />
**[[2a9o]], [[2a9p]], [[6ebb]] – SpRR + Mn + BeF3<br />
**[[2a9o]], [[2a9p]], [[6ebb]] – SpRR + Mn + BeF3<br />
-
**[[4zms]] ,[[4zmr]] - SpRR + Mg + BeF3<br />
+
**[[4zms]], [[4zmr]] - SpRR + Mg + BeF3<br />
**[[2pln]] – HP1043 – ''Helicobacter pylori''<br />
**[[2pln]] – HP1043 – ''Helicobacter pylori''<br />
-
**[[3kht]] – RR – ''Hahella chejuensis''
+
**[[3kht]] – RR – ''Hahella chejuensis''<br />
 +
**[[6wsh]] – EfRR EutV<br />
 +
**[[6ww6]] – EfRR EutV + RNA <br />
 +
**[[6zii]], [[6zil]] – SeRR RcsB receiver domain – ''Salmonella enterica'' <br />
 +
**[[6zix]], [[6zj2]] – SeRR RcsB receiver domain + DNA<br />
 +
**[[7pv7]], [[7pva]] – PgRR PorX – ''Porphyromonas gingivalis''<br />
 +
**[[7pvx]] – PgRR PorX (mutant) + DNA<br />
*Response regulator complex with histidine kinase
*Response regulator complex with histidine kinase
-
**[[3dge]], [[3dgf]] – TmRR + sensor protein<br/ >
+
**[[4jas]], [[4jav]], [[3a0r]], [[6rh8]], [[6rh7]] – TmRR (mutant) + histidine kinase<br />
-
**[[3a0r]] – TmTrrA (mutant) + sensor protein<br />
+
**[[5uht]], [[6rfv]], [[3dge]], [[3dgf]], [[6rgy]], [[6rgz]], [[6rh0]], [[6rh1]], [[6rh2]] – TmRR + histidine kinase<br />
-
**[[4jas]], [[4jav]] – TmRR (mutant) + histidine kinase<br />
+
-
**[[5uht]] – TmRR + sensor histidine kinase<br />
+
}}
}}
[[Category:Topic Page]]
[[Category:Topic Page]]

Current revision

3D Structures of response regulator

Updated on 11-October-2023

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Joel L. Sussman

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