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Ribonuclease 3D structures
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{{#tree:id=OrganizedByTopic|openlevels=0| | {{#tree:id=OrganizedByTopic|openlevels=0| | ||
| - | *RNase I or RNase A | + | *RNase I or RNase A or RNase pancreatic |
| - | **[[4kxh]] - hRNase I - human | + | **[[4kxh]] - hRNase I pancreatic- human<br /> |
| - | + | ||
**[[2k11]] - hRNase I pancreatic - NMR<br /> | **[[2k11]] - hRNase I pancreatic - NMR<br /> | ||
| - | **[[ | + | **[[1dza]] - hRNase I pancreatic (mutant) <br /> |
| + | **[[1afu]], [[1bel]], [[1c0b]], [[1c0c]], [[1jvv]], [[1jvt]], [[1js0]], [[1fs3]], [[1kf2]], [[1kf3]], [[1kf4]], [[1kf5]], [[1kf7]], [[1kf8]], [[1aqp]], [[1a2w]], [[1rnw]], [[1rnz]], [[1rno]], [[1rnq]], [[1rbx]], [[1ssc]], [[1srn]], [[1lsq]], [[1rat]], [[1rbn]], [[1rha]], [[1rhb]], [[1rnx]], [[1rny]], [[1rsm]], [[1xps]], [[1xpt]], [[2e3w]], [[2g4w]], [[2g4x]], [[2gbq]], [[2blp]], [[2blz]], [[2jvt]], [[2g8q]], [[2rat]], [[3mwq]], [[3mx8]], [[3i67]], [[3i6f]], [[3i6h]], [[3i6j]], [[3i7w]], [[3eux]], [[3euy]], [[3euz]], [[3ev0]], [[3ev1]], [[3ev2]], [[3ev3]], [[3ev4]], [[3ev5]], [[3ev6]], [[3dh5]], [[3mwr]], [[3mzq]], [[3mzr]], [[3rat]], [[3srn]], [[3rn3]], [[4rat]], [[4ao1]], [[4j5z]], [[4j60]], [[4j61]], [[4j62]], [[4j63]], [[4j64]], [[4j65]], [[4j66]], [[4j67]], [[4j68]], [[4j69]], [[4j6a]], [[4mxf]], [[4ooh]], [[4ot4]], [[4qh3]], [[4rte]], [[4s0q]], [[4s18]], [[4srn]], [[5d6u]], [[5jmg]], [[5jml]], [[5na9]], [[5obc]], [[5obd]], [[5obe]], [[5rat]], [[5rsa]], [[6etr]], [[6etq]], [[6etp]], [[6eto]], [[6etn]], [[6etm]], [[6etl]], [[6etk]], [[6rat]], [[6xvx]], [[6xw0]], [[6yo1]], [[7p4r]], [[7p8r]], [[7pni]], [[7q75]], [[7q76]], [[7q77]], [[7q78]], [[7q79]], [[7q7a]], [[7q7b]], [[7rat]], [[7rsa]], [[8rat]], [[8rsa]], [[9rat]], [[9rsa]] - bRNase I pancreatic - bovine<br /> | ||
**[[3a1r]], [[4zz4]], [[5d97]], [[5rsa]], [[6rsa]] - bRNase I pancreatic - neutron<br /> | **[[3a1r]], [[4zz4]], [[5d97]], [[5rsa]], [[6rsa]] - bRNase I pancreatic - neutron<br /> | ||
**[[2aas]] - bRNase I pancreatic - NMR<br /> | **[[2aas]] - bRNase I pancreatic - NMR<br /> | ||
| - | **[[ | + | **[[1a5p]], [[1a5q]], [[1c9v]], [[1c8w]], [[1c9x]], [[1eic]], [[1eid]], [[1eie]], [[1dy5]], [[1izp]], [[1izq]], [[1izr]], [[1kh8]], [[1ssa]], [[1ssb]], [[1ymn]], [[1ymr]], [[1ymw]], [[2apq]], [[2nui]], [[2op2]], [[3i7x]], [[3i7y]], [[3fkz]], [[3fl3]], [[3dh6]], [[3di7]], [[3di8]], [[3di9]], [[3dib]], [[3dic]], [[2oqf]], [[3bcm]], [[3bco]], [[3bcp]], [[3rsd]], [[3rsk]], [[3rsp]], [[4rsd]], [[3ql1]], [[3ql2]], [[3rh1]], [[3rid]], [[4o36]], [[4o37]], [[4k7m]], [[4k7l]], [[4okf]] - bRNase I pancreatic (mutant)<br /> |
**[[1rar]], [[1ras]] - bRNase I pancreatic fluoroscent<br /> | **[[1rar]], [[1ras]] - bRNase I pancreatic fluoroscent<br /> | ||
**[[6qmn]] - RNase I pancreatic - bison<br /> | **[[6qmn]] - RNase I pancreatic - bison<br /> | ||
| - | **[[1rra]] - | + | **[[1rra]] - rRNase I pancreatic - rat<br /> |
| + | **[[3f8g]], [[2e0j]], [[2e0l]], [[2e0m]], [[2e0o]], [[1h8x]], [[1e21]], | ||
**[[3ljd]], [[3ln8]], [[2vq8]], [[2vq9]] - ZeRNase I - Zebrafish<br /> | **[[3ljd]], [[3ln8]], [[2vq8]], [[2vq9]] - ZeRNase I - Zebrafish<br /> | ||
**[[2pqx]], [[2pqy]] - EcRNase I - ''Escherichia coli''<br /> | **[[2pqx]], [[2pqy]] - EcRNase I - ''Escherichia coli''<br /> | ||
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**[[4l55]] - bRNase I + aziru<br /> | **[[4l55]] - bRNase I + aziru<br /> | ||
**[[6qe9]] - bRNase I + Pt<br /> | **[[6qe9]] - bRNase I + Pt<br /> | ||
| + | **[[7qhr]], [[7qpw]], [[7qpy]], [[7qpz]], [[7qq0]], [[7z6d]], [[7z6g]], [[8oqc]], [[8oqd]], [[8oqe]], [[8oqf]], [[8oqg]] - bRNase I + Rh derivative<br /> | ||
| + | **[[7r1p]] - bRNase I + Au derivative<br /> | ||
| + | **[[7qwh]] - bRNase I + V derivative<br /> | ||
**[[6pvu]], [[6pvv]], [[6pvw]], [[6pvx]] - bRNase I + polyphosphate<br /> | **[[6pvu]], [[6pvv]], [[6pvw]], [[6pvx]] - bRNase I + polyphosphate<br /> | ||
**[[3tsr]] - mRNase I + inhibitor - mouse<br /> | **[[3tsr]] - mRNase I + inhibitor - mouse<br /> | ||
| Line 52: | Line 56: | ||
**[[1h1h]] - hRNase III + nucleotide<br /> | **[[1h1h]] - hRNase III + nucleotide<br /> | ||
**[[6v5b]], [[6v5c]] - hRNase III + DGCR8 + microRNA – Cryo EM<br /> | **[[6v5b]], [[6v5c]] - hRNase III + DGCR8 + microRNA – Cryo EM<br /> | ||
| + | **[[7ty1]] - RNase III - Macaque<br /> | ||
**[[1z5f]] - BuRNase III<br /> | **[[1z5f]] - BuRNase III<br /> | ||
**[[1t4n]], [[1t4o]] - yRNase III - yeast - NMR<br /> | **[[1t4n]], [[1t4o]] - yRNase III - yeast - NMR<br /> | ||
| Line 63: | Line 68: | ||
**[[1o0w]] - TmRNase III - ''Thermotoga maritima''<br /> | **[[1o0w]] - TmRNase III - ''Thermotoga maritima''<br /> | ||
**[[3n3w]], [[3o2r]] - RNase III nuclease domain - ''Campylobacter jejuni''<br /> | **[[3n3w]], [[3o2r]] - RNase III nuclease domain - ''Campylobacter jejuni''<br /> | ||
| + | **[[7r97]] - EcRNase III (mutant) + RNA<br /> | ||
| - | *RNase III Dicer | + | *RNase III Dicer or endoRNase dicer or double-strand-specific RNase mdcr-1 |
**[[4ngg]], [[4ngf]], [[4nha]] – hDicer platform-PAZ-connector helix cassette residues 765-1065 + RNA<br /> | **[[4ngg]], [[4ngf]], [[4nha]] – hDicer platform-PAZ-connector helix cassette residues 765-1065 + RNA<br /> | ||
| Line 73: | Line 79: | ||
**[[5zal]], [[5zam]] - hDicer + RISC-loading complex subunit TARBP2 + RNA<br /> | **[[5zal]], [[5zam]] - hDicer + RISC-loading complex subunit TARBP2 + RNA<br /> | ||
**[[3c4b]], [[3c4t]] – mDicer RNase III+dsRNA binding domains <br /> | **[[3c4b]], [[3c4t]] – mDicer RNase III+dsRNA binding domains <br /> | ||
| + | **[[7yz4]] – mDicer – Cryo EM <br /> | ||
| + | **[[7yym]], [[7yyn]], [[7zpi]] – mDicer RNase III+ RNA – Cryo EM <br /> | ||
| + | **[[7zpj]] – mDicer + RNA + TARBP2 – Cryo EM <br /> | ||
**[[6bua]] – DmDicer2 – ''Drosophila melanogaster''<br /> | **[[6bua]] – DmDicer2 – ''Drosophila melanogaster''<br /> | ||
**[[6bu9]] – DmDicer2 + RNA <br /> | **[[6bu9]] – DmDicer2 + RNA <br /> | ||
**[[2l6m]] - Dicer residues 1259-1358 - fission yeast - NMR<br /> | **[[2l6m]] - Dicer residues 1259-1358 - fission yeast - NMR<br /> | ||
| - | **[[2ff1]] - Dicer - ''Giardia intestinalis''<br /> | + | **[[2ff1]] - Dicer - ''Giardia intestinalis''<br /> |
| + | **[[7dey]] - Dicer - ''Pichia stipitis''<br /> | ||
*RNase 4 | *RNase 4 | ||
| Line 87: | Line 97: | ||
**[[1kvz]] - BuRNase 4 - NMR<br /> | **[[1kvz]] - BuRNase 4 - NMR<br /> | ||
| - | *RNase 5 or angiogenin | + | *RNase 5 or angiogenin (Ang) |
| - | **[[4aoh]] - hRNase 5 <br /> | + | **[[1ang]], [[1b1i]], [[1h52]], [[4aoh]], [[5eop]], [[5epz]], [[5eqo]] - hRNase 5 <br /> |
| - | **[[1un3]], [[1un4]], [[1un5]], [[ | + | **[[1awz]] – hAng - NMR<br /> |
| + | **[[7npm]], [[8oo3]], [[8oo4]] – hAng + Pt derivative<br /> | ||
| + | **[[1b1e]], [[1b1j]], [[1gv7]], [[1h53]], [[1hby]], [[1k58]], [1k59]], [[1k5a]], [[1k5b]], [[1un3]], [[1un4]], [[1un5]], [[2ang]], [[4ahd]], [[4ahe]], [[4ahf]], [[4ahg]], [[4ahh]], [[4ahi]], [[4ahj]], [[4ahk]], [[4ahl]], [[4ahm]], [[4ahn]], [[4b36]], [[5m9v]], [[5m9t]], [[5m9s]], [[5m9r]], [[5m9q]], [[5m9p]], [[5m9m]], [[5m9j]], [[5m9g]], [[5m9c]], [[5m9a]], [[7pnj]], [[7pnp]], [[7pnr]] - hRNase 5 (mutant)<br /> | ||
**[[1h0d]] - hRNase 5 + antibody<br /> | **[[1h0d]] - hRNase 5 + antibody<br /> | ||
| + | **[[1a4y]] - hRNase 5 + RNae inhibitor<br /> | ||
| + | **[[8af0]] - hRNase 5 + RNA<br /> | ||
| + | **[[1agi]] – bAng <br /> | ||
| + | **[[1gio]] – bAng - NMR<br /> | ||
| + | **[[4qfi]], [[4qfj]] – rAng<br /> | ||
| + | **[[2bwk]], [[2bwl]] – mAng<br /> | ||
| + | **[[3zbv]] – mAng-2<br /> | ||
| + | **[[3zbw]] – mAng-3<br /> | ||
| + | **[[2j4t]] – mAng-4<br /> | ||
**[[3lje]] - ZeRNase 5<br /> | **[[3lje]] - ZeRNase 5<br /> | ||
| + | **[[7bfk]], [[7bfl]] – saAng-1 (mutant) - salmon<br /> | ||
*RNase 6 | *RNase 6 | ||
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**[[1rbj]] - bRNase B + tetranucleotide <br /> | **[[1rbj]] - bRNase B + tetranucleotide <br /> | ||
| - | *RNase BA | + | *RNase BA or barnase |
**[[1yvs]], [[1b2x]], [[1a2p]], [[1bni]], [[1bnj]] - BaRNase BA - ''Bacillus amyloliquefaciens''<br /> | **[[1yvs]], [[1b2x]], [[1a2p]], [[1bni]], [[1bnj]] - BaRNase BA - ''Bacillus amyloliquefaciens''<br /> | ||
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**[[3da7]], [[1brs]], [[1bgs]] - BaRNase BA + barstar <br /> | **[[3da7]], [[1brs]], [[1bgs]] - BaRNase BA + barstar <br /> | ||
**[[1x1u]], [[1x1x]], [[1x1y]], [[1b27]], [[1b2u]], [[1b3s]], [[1x1w]] - BaRNase BA + barstar (mutant) <br /> | **[[1x1u]], [[1x1x]], [[1x1y]], [[1b27]], [[1b2u]], [[1b3s]], [[1x1w]] - BaRNase BA + barstar (mutant) <br /> | ||
| - | **[[1b2s]], [[2za4]]. [[6pqk]] - BaRNase BA (mutant) + barstar (mutant) <br /> | + | **[[1b2s]], [[2za4]]. [[6pqk]], [[7mrx]] - BaRNase BA (mutant) + barstar (mutant) <br /> |
**[[1brn]], [[2kf5]], [[2kf6]], [[1rnb]] - BaRNase BA + nucleotide<br /> | **[[1brn]], [[2kf5]], [[2kf6]], [[1rnb]] - BaRNase BA + nucleotide<br /> | ||
**[[1brn]], [[2kf5]], [[2kf6]], [[1rnb]] - BaRNase BA + nucleotide<br /> | **[[1brn]], [[2kf5]], [[2kf6]], [[1rnb]] - BaRNase BA + nucleotide<br /> | ||
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*RNase E; Domains: recognition 1-28; S1 35-125; catalytic 1-515 | *RNase E; Domains: recognition 1-28; S1 35-125; catalytic 1-515 | ||
| + | **[[8b0j]] - EcRNase E + RapZ + RNA – Cryo EM<br /> | ||
**[[2vmk]], [[2c4r]], [[2bx2]] - EcRNase E catalytic domain<br /> | **[[2vmk]], [[2c4r]], [[2bx2]] - EcRNase E catalytic domain<br /> | ||
**[[1slj]] - EcRNase E S1 domain - NMR<br /> | **[[1slj]] - EcRNase E S1 domain - NMR<br /> | ||
| Line 134: | Line 157: | ||
**[[5ohg]] - EcRNase E residues 813-850 + enolase<br /> | **[[5ohg]] - EcRNase E residues 813-850 + enolase<br /> | ||
**[[4oxp]] - CcRNase E S1+ sensor domains – ''Caulobacter crescentus'' <br /> | **[[4oxp]] - CcRNase E S1+ sensor domains – ''Caulobacter crescentus'' <br /> | ||
| - | **[[6x2d]] - | + | **[[6x2d]] - VcRNase E DNAse I domain – ''Vibrio cholerae''<br /> |
*RNase F1 | *RNase F1 | ||
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**[[4z0u]] - EcRNase H + peptide<br /> | **[[4z0u]] - EcRNase H + peptide<br /> | ||
**[[3d0p]], [[3ey1]], [[3i8d]], [[4opj]], [[4opk]], [[5swm]] - BhRNase H (mutant) + DNA - ''Bacillus halodurans''<br /> | **[[3d0p]], [[3ey1]], [[3i8d]], [[4opj]], [[4opk]], [[5swm]] - BhRNase H (mutant) + DNA - ''Bacillus halodurans''<br /> | ||
| + | **[[8cty]], [[8ctz]], [[8cu0]], [[8sv3]], [[8sv4]] - RNase H (mutant) + DNA - ''Halalkalibacterium halodurans''<br /> | ||
**[[1zbf]] - BhRNase H (mutant) <br /> | **[[1zbf]] - BhRNase H (mutant) <br /> | ||
**[[6dpp]], [[6dpo]], [[6dpn]], [[6dpm]], [[6dpl]], [[6dpk]], [[6dpj]], [[6dpi]], [[6dpg]], [[6dph]], [[6dpf]], [[6dpe]], [[6dpd]], [[6dpc]], [[6dpb]], [[6dpa]], [[6dp9]], [[6dp8]] [[6dp7]], [[6dp6]], [[6dp5]], [[6dp4]], [[6dp3]], [[6dp2]], [[6dp1]], [[6dp0]], [[6doz]], [[6doy]], [[6dox]], [[6dow]], [[6dov]], [[6dou]], [[6dot]], [[6dos]], [[6dor]], [[6doq]], [[6dop]], [[6doo]], [[6don]], [[6dom]], [[6dol]], [[6dok]], [[6doj]], [[6doi]], [[6doh]], [[6dog]], [[6dof]], [[6doe]], [[6dod]], [[6doc]], [[6dob]], [[6doa]], [[6do9]], [[6do8]], [[6dmv]], [[6dmn]] - BhRNase H + RNA + DNA<br /> | **[[6dpp]], [[6dpo]], [[6dpn]], [[6dpm]], [[6dpl]], [[6dpk]], [[6dpj]], [[6dpi]], [[6dpg]], [[6dph]], [[6dpf]], [[6dpe]], [[6dpd]], [[6dpc]], [[6dpb]], [[6dpa]], [[6dp9]], [[6dp8]] [[6dp7]], [[6dp6]], [[6dp5]], [[6dp4]], [[6dp3]], [[6dp2]], [[6dp1]], [[6dp0]], [[6doz]], [[6doy]], [[6dox]], [[6dow]], [[6dov]], [[6dou]], [[6dot]], [[6dos]], [[6dor]], [[6doq]], [[6dop]], [[6doo]], [[6don]], [[6dom]], [[6dol]], [[6dok]], [[6doj]], [[6doi]], [[6doh]], [[6dog]], [[6dof]], [[6doe]], [[6dod]], [[6doc]], [[6dob]], [[6doa]], [[6do9]], [[6do8]], [[6dmv]], [[6dmn]] - BhRNase H + RNA + DNA<br /> | ||
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**[[1qhk]] - yRNase HI N terminal - NMR<br /> | **[[1qhk]] - yRNase HI N terminal - NMR<br /> | ||
**[[3h08]] - RNase HI - ''Chlorobaculum tepidum''<br /> | **[[3h08]] - RNase HI - ''Chlorobaculum tepidum''<br /> | ||
| + | **[[1g15]], [[1rdd]], [[1rnh]], [[7vsa]], [[7vsb]], [[7vsc]], [[7vsd]], [[7vse]] - EcRNase HI <br /> | ||
**[[3aa2]], [[3aa3]], [[3aa4]], [[3aa5]], [[2yv0]], [[2z1g]], [[2z1h]], [[2z1i]], [[2z1j]], [[1wse]], [[1wsf]], [[1wsg]], [[1wsh]], [[1wsi]], [[1wsj]], [[1jxb]], [[1jl1]], [[1f21]], [[1kva]], [[1kvb]], [[1kvc]], [[1goa]], [[1gob]], [[1goc]] - EcRNase HI (mutant) <br /> | **[[3aa2]], [[3aa3]], [[3aa4]], [[3aa5]], [[2yv0]], [[2z1g]], [[2z1h]], [[2z1i]], [[2z1j]], [[1wse]], [[1wsf]], [[1wsg]], [[1wsh]], [[1wsi]], [[1wsj]], [[1jxb]], [[1jl1]], [[1f21]], [[1kva]], [[1kvb]], [[1kvc]], [[1goa]], [[1gob]], [[1goc]] - EcRNase HI (mutant) <br /> | ||
| - | **[[1g15]], [[1rdd]], [[1rnh]] - EcRNase HI <br /> | ||
**[[1rch]] - EcRNase HI - NMR <br /> | **[[1rch]] - EcRNase HI - NMR <br /> | ||
**[[2zqb]] - SoRNase HI (mutant) - ''Shewanella oneidensis''<br /> | **[[2zqb]] - SoRNase HI (mutant) - ''Shewanella oneidensis''<br /> | ||
| Line 180: | Line 204: | ||
**[[3puf]], [[3p56]], [[3p5j]] - hRNase HII subunits α+β+γ<br /> | **[[3puf]], [[3p56]], [[3p5j]] - hRNase HII subunits α+β+γ<br /> | ||
| + | **[[7n2p]] - hRNase HII subunit β + HLA + macroglobulin + Tcr<br /> | ||
**[[3kio]] - mRNase HII subunits α+β+γ <br /> | **[[3kio]] - mRNase HII subunits α+β+γ <br /> | ||
**[[3p83]] - AfRNase HII + DNA polymerase sliding clamp - ''Archaeoglobus fulgidus''<br /> | **[[3p83]] - AfRNase HII + DNA polymerase sliding clamp - ''Archaeoglobus fulgidus''<br /> | ||
| Line 190: | Line 215: | ||
**[[1eke]] - MjRNase HII - ''Methanocaldococcus jannaschii''<br /> | **[[1eke]] - MjRNase HII - ''Methanocaldococcus jannaschii''<br /> | ||
**[[5y9p]] - SaRNase HII - ''Staphylococcus aureus''<br /> | **[[5y9p]] - SaRNase HII - ''Staphylococcus aureus''<br /> | ||
| + | **[[7uwe]] - EcRNase HII in excision repair complex – Cryo EM<br /> | ||
*RNase HIII | *RNase HIII | ||
| Line 203: | Line 229: | ||
**[[3bk1]] - TtRNase J <br /> | **[[3bk1]] - TtRNase J <br /> | ||
**[[3bk2]] - TtRNase J + nucleotide<br /> | **[[3bk2]] - TtRNase J + nucleotide<br /> | ||
| + | **[[7pcr]] - RNase J – ''Helicobacter pylori''<br /> | ||
| + | **[[7wnt]] - MtRNase J <br /> | ||
| + | **[[7wnu]] - MtRNase J + RNA<br /> | ||
**[[3zq4]] - BsRNase J1 - ''Bacillus subtilis'' <br /> | **[[3zq4]] - BsRNase J1 - ''Bacillus subtilis'' <br /> | ||
| + | **[[6k6s]] - SeRNase J1 - ''Staphylococcus epidermidis'' <br /> | ||
| + | **[[6k6w]] - SeRNase J2 <br /> | ||
**[[5haa]] - MpRNase - ''Methanolobus psychrophilus''<br /> | **[[5haa]] - MpRNase - ''Methanolobus psychrophilus''<br /> | ||
**[[5hab]], [[5ws2]] - MpRNase (mutant) + RNA<br /> | **[[5hab]], [[5ws2]] - MpRNase (mutant) + RNA<br /> | ||
| Line 217: | Line 248: | ||
**[[6vq6]], [[6vq7]], [[6vq8]], [[6vqc]], [[6vqg]], [[6vqh]] - rRNase K in v-ATPase – Cryo EM <br /> | **[[6vq6]], [[6vq7]], [[6vq8]], [[6vqc]], [[6vqg]], [[6vqh]] - rRNase K in v-ATPase – Cryo EM <br /> | ||
| - | *RNase L | + | *RNase L or 2-5A-dependent RNase |
| + | **[[4g8k]] - hRNase L <br /> | ||
| + | **[[1wdy]], [[4g8l]] - hRNase L + 2-5A<br /> | ||
| + | **[[4oau]] - hRNase L + ADP + RNA<br /> | ||
**[[4o1o]] - pRNase L + oligoadenylate + CMP - pig <br /> | **[[4o1o]] - pRNase L + oligoadenylate + CMP - pig <br /> | ||
**[[4o1p]] - pRNase L + oligoadenylate + AMPPNP <br /> | **[[4o1p]] - pRNase L + oligoadenylate + AMPPNP <br /> | ||
**[[4oav]] - pRNase L + oligoadenylate + AMPPCP + RNA<br /> | **[[4oav]] - pRNase L + oligoadenylate + AMPPCP + RNA<br /> | ||
| + | **[[7dsy]], [[7dts]], [[7elw]] - pRNase L + inhibitor<br /> | ||
| + | **[[6m11]], [[6m12]], [[6m13]] - pRNase L + drug<br /> | ||
*RNase LE | *RNase LE | ||
| Line 242: | Line 278: | ||
**[[6w6v]], [[7c79]], [[7c7a]] - yRNase MRP – Cryo EM<br /> | **[[6w6v]], [[7c79]], [[7c7a]] - yRNase MRP – Cryo EM<br /> | ||
| + | **[[7c7a]] - yRNase MRP + RNA – Cryo EM<br /> | ||
*RNase MS | *RNase MS | ||
| Line 250: | Line 287: | ||
**[[6tg6]] - GsRNase M5 toprim domain <br /> | **[[6tg6]] - GsRNase M5 toprim domain <br /> | ||
| - | **[[6tgj]] - GsRNase M5 RBD <br /> | + | **[[6tgj]], [[6z2b]] - GsRNase M5 RBD <br /> |
**[[6tpq]] - BsRNase M5 in 50S ribosome – Cryo EM<br /> | **[[6tpq]] - BsRNase M5 in 50S ribosome – Cryo EM<br /> | ||
| Line 263: | Line 300: | ||
**[[6ahr]] - hRNase P – cryo EM<br /> | **[[6ahr]] - hRNase P – cryo EM<br /> | ||
**[[6ahu]] - hRNase P + tRNA – cryo EM<br /> | **[[6ahu]] - hRNase P + tRNA – cryo EM<br /> | ||
| + | **[[7onu]] - hRNase P catalytic subunit + tRNA-Tyr + CoA dehydrogenase – cryo EM<br /> | ||
**[[5nfj]] - hRNase P protein 1 + SAM<br /> | **[[5nfj]] - hRNase P protein 1 + SAM<br /> | ||
**[[6cwx]] - hRNase P subunits P20+P25 <br /> | **[[6cwx]] - hRNase P subunits P20+P25 <br /> | ||
| Line 274: | Line 312: | ||
**[[3q1q]], [[3q1r]] - TmRNase P + TmRNase P RNA + tRNAPhe <br /> | **[[3q1q]], [[3q1r]] - TmRNase P + TmRNase P RNA + tRNAPhe <br /> | ||
**[[1d6t]], [[6d1r]] - SaRNase P <br /> | **[[1d6t]], [[6d1r]] - SaRNase P <br /> | ||
| + | **[[6ov1]] - SaRNase P (mutant)<br /> | ||
**[[2a64]] - GsRNase P (mutant) <br /> | **[[2a64]] - GsRNase P (mutant) <br /> | ||
**[[1a6f]], [[1nbs]], [[2jg4]] - BsRNase P (mutant) <br /> | **[[1a6f]], [[1nbs]], [[2jg4]] - BsRNase P (mutant) <br /> | ||
| Line 281: | Line 320: | ||
**[[2k3r]]. [[2ki7]] - PfRNase P <br /> | **[[2k3r]]. [[2ki7]] - PfRNase P <br /> | ||
**[[2ljp]] - EcRNase P <br /> | **[[2ljp]] - EcRNase P <br /> | ||
| + | **[[7uo0]], [[7uo1]], [[7uo2]], [[7uo5]] - EcRNase P + RNA – Cryo EM<br /> | ||
**[[2av5]] - PhRNase P component 2<br /> | **[[2av5]] - PhRNase P component 2<br /> | ||
**[[1x0t]] - PhRNase P component 4<br /> | **[[1x0t]] - PhRNase P component 4<br /> | ||
| Line 288: | Line 328: | ||
**[[6k0b]] - MjRNase P components 1-4 + L7AE + tRNA + RPR – Cryo EM<br /> | **[[6k0b]] - MjRNase P components 1-4 + L7AE + tRNA + RPR – Cryo EM<br /> | ||
**[[5diz]], [[5ft9]] - RNase P2 - ''Arabidopsis thaliana''<br /> | **[[5diz]], [[5ft9]] - RNase P2 - ''Arabidopsis thaliana''<br /> | ||
| + | **[[7og5]] - RNase P – Cryo EM – ''Halorhodospira halophila''<br /> | ||
| + | **[[7f3e]] - AaRNase P – cryo EM<br /> | ||
| + | |||
| + | **[[7e8j]], [[7e8k]] - RNase P - ''Thermococcus celer'' <br /> | ||
| + | **[[7e8o]] - RNase P + tRNA-His - ''Planctomyceetes bacterium'' <br /> | ||
*RNase PH | *RNase PH | ||
| Line 302: | Line 347: | ||
**[[3who]] - omRNase PO1 – oyster mushroom <br /> | **[[3who]] - omRNase PO1 – oyster mushroom <br /> | ||
**[[3wr2]] - omRNase PO1 + nucleotide <br /> | **[[3wr2]] - omRNase PO1 + nucleotide <br /> | ||
| + | |||
| + | *RNase pop2 | ||
| + | |||
| + | **[[4b8a]] - yRNase pop2 + cell division cycle protein 39<br /> | ||
| + | **[[4b8c]] - yRNase pop2 + cell division cycle protein 39 + CCR4<br /> | ||
*RNase R | *RNase R | ||
**[[5xgu]] - EcRNase R (mutant) <br /> | **[[5xgu]] - EcRNase R (mutant) <br /> | ||
| + | **[[7dcy]] - MgRNase R – ''Mycoplasma genitalium''<br /> | ||
| + | **[[7dic]], [[7did]], [[7dol]] - MgRNase R (mutant) + RNA<br /> | ||
*RNase RH | *RNase RH | ||
**[[1bol]] - RNase RH - ''Rhizopus niveus'' <br /> | **[[1bol]] - RNase RH - ''Rhizopus niveus'' <br /> | ||
| + | |||
| + | *RNase RRP | ||
| + | |||
| + | **[[7tuv]] - RNase RRP - ''Trypanosoma brucei'' <br /> | ||
*RNase S | *RNase S | ||
| Line 323: | Line 379: | ||
**[[1iqq]] - RNase S3 - Japanese pear <br /> | **[[1iqq]] - RNase S3 - Japanese pear <br /> | ||
| - | *RNase SA | + | *RNase SA or guanyl-specific RNase SA |
**[[3a5e]], [[1zgx]], [[1ynv]], [[1t2h]], [[1t2i]], [[1uci]], [[1ucj]], [[1uck]], [[1ucl]], [[1i70]], [[1i8v]], [[1box]], [[4gho]], [[4j5g]], [[4j5k]] - SaRNase SA guanyl-specific (mutant) - ''Streptomyces aureofaciens'' <br /> | **[[3a5e]], [[1zgx]], [[1ynv]], [[1t2h]], [[1t2i]], [[1uci]], [[1ucj]], [[1uck]], [[1ucl]], [[1i70]], [[1i8v]], [[1box]], [[4gho]], [[4j5g]], [[4j5k]] - SaRNase SA guanyl-specific (mutant) - ''Streptomyces aureofaciens'' <br /> | ||
| Line 338: | Line 394: | ||
**[[1ioo]] - RNase SF11 - ''Nicotiana alata'' <br /> | **[[1ioo]] - RNase SF11 - ''Nicotiana alata'' <br /> | ||
| - | *RNase T | + | *RNase T or exonuclease T or 3’-5’ exonuclease |
| - | **[[2is3]] - EcRNase T <br /> | + | **[[2is3]], [[7t2s]] - EcRNase T <br /> |
**[[3ngy]] - EcRNase T (mutant)<br /> | **[[3ngy]] - EcRNase T (mutant)<br /> | ||
**[[3ngz]] - EcRNase T (mutant) + nucleotide<br /> | **[[3ngz]] - EcRNase T (mutant) + nucleotide<br /> | ||
| Line 349: | Line 405: | ||
*RNase T1 | *RNase T1 | ||
| + | **[[5gy6]] - muRNase T1 - mushroom<br /> | ||
| + | **[[6ls1]], [[7w05]] - muRNase T1 + nucleotide<br /> | ||
**[[1tto]], [[1rn1]], [[1rn4]], [[1rnt]], [[2aad]], [[2aae]] - AoRNase T1 - ''Aspergillus oryzae'' <br /> | **[[1tto]], [[1rn1]], [[1rn4]], [[1rnt]], [[2aad]], [[2aae]] - AoRNase T1 - ''Aspergillus oryzae'' <br /> | ||
**[[1q9e]], [[1iyy]], [[1i2e]], [[1i2f]], [[1i2g]], [[1i3f]], [[1i3i]], [[1hz1]], [[1fys]], [[1fzu]], [[1ch0]], [[4bir]], [[3bir]], [[5bir]], [[1g02]], [[1hyf]], [[1trp]], [[1trq]], [[2bir]], [[4rnt]], [[5rnt]], [[6rnt]], [[7rnt]], [[8rnt]], [[9rnt]] - AoRNase T1 (mutant)<br /> | **[[1q9e]], [[1iyy]], [[1i2e]], [[1i2f]], [[1i2g]], [[1i3f]], [[1i3i]], [[1hz1]], [[1fys]], [[1fzu]], [[1ch0]], [[4bir]], [[3bir]], [[5bir]], [[1g02]], [[1hyf]], [[1trp]], [[1trq]], [[2bir]], [[4rnt]], [[5rnt]], [[6rnt]], [[7rnt]], [[8rnt]], [[9rnt]] - AoRNase T1 (mutant)<br /> | ||
| Line 355: | Line 413: | ||
**[[1lov]], [[1low]], [[1loy]], [[1i0v]], [[1i0x]], [[1b2m]], [[1rhl]], [[1bir]], [[1rgk]], [[1rgl]], [[5hoh]] - AoRNase T1 (mutant) + nucleotide<br /> | **[[1lov]], [[1low]], [[1loy]], [[1i0v]], [[1i0x]], [[1b2m]], [[1rhl]], [[1bir]], [[1rgk]], [[1rgl]], [[5hoh]] - AoRNase T1 (mutant) + nucleotide<br /> | ||
**[[3rnt]] - AoRNase T1 + V<br /> | **[[3rnt]] - AoRNase T1 + V<br /> | ||
| - | **[[5gy6]] - RNase T1 - ''Hericium erinaceus''<br /> | ||
*RNase T2 | *RNase T2 | ||
| Line 373: | Line 430: | ||
**[[6wzf]], [[5wz4]] - MtRNase C20<br /> | **[[6wzf]], [[5wz4]] - MtRNase C20<br /> | ||
**[[5sv2]] - MtRNase C21<br /> | **[[5sv2]] - MtRNase C21<br /> | ||
| + | **[[7vwo]] - MtRNase C43 + B43<br /> | ||
**[[5l6m]], [[5k8j]] - CcRNase C + B<br /> | **[[5l6m]], [[5k8j]] - CcRNase C + B<br /> | ||
**[[5l6l]] - CcRNase C + B + DNA<br /> | **[[5l6l]] - CcRNase C + B + DNA<br /> | ||
| Line 386: | Line 444: | ||
**[[2cbn]] - EcRNase Z<br /> | **[[2cbn]] - EcRNase Z<br /> | ||
| - | *RNase ZC3H12A | + | *RNase ZC3H12A or regnase |
| + | **[[3v32]], [[3v34]] - hRNase ZC N-terminal domain 112-296<br /> | ||
| + | **[[3v33]] - hRNase ZC N-terminal+zinc finger domains 112-334<br /> | ||
| + | **[[2n5j]] - mRNase ZC N-terminal domain - NMR<br /> | ||
| + | **[[2n5l]] - mRNase ZC C-terminal domain 544-596 - NMR<br /> | ||
| + | **[[2n5k]] - mRNase ZC zinc finger domain 299-327 - NMR<br /> | ||
**[[5h9v]], [[5h9w]] - mRNase ZC PIN domain<br /> | **[[5h9v]], [[5h9w]] - mRNase ZC PIN domain<br /> | ||
| Line 397: | Line 460: | ||
*Oligoribonuclease | *Oligoribonuclease | ||
| + | **[[6rci]] - hORNase <br /> | ||
**[[2igi]], [[1yta]] - EcORNase<br /> | **[[2igi]], [[1yta]] - EcORNase<br /> | ||
**[[2gbz]] - ORNase - ''Xanthomonas campestris''<br /> | **[[2gbz]] - ORNase - ''Xanthomonas campestris''<br /> | ||
**[[1j9a]] - HiORNase - ''Haemophilus influenza''<br /> | **[[1j9a]] - HiORNase - ''Haemophilus influenza''<br /> | ||
| - | **[[6nkl]] - HiORNase + VAPB1<br /> | ||
**[[3tr8]] - CbORNase - ''Coxiella burnetii''<br /> | **[[3tr8]] - CbORNase - ''Coxiella burnetii''<br /> | ||
| - | **[[5cy4]] - | + | **[[5cy4]] - AbORNase - ''Acinetobacter baumannii''<br /> |
| + | **[[7v5h]] - VcORNase <br /> | ||
| + | **[[6a4a]] - CpORNase – Colwella psychreythraea<br /> | ||
| + | **[[6rk6]] - ORNase - metagenome<br /> | ||
| + | **[[7v9z]] - PaORNase <br /> | ||
| + | **[[7wik]] - MsORNase - ''Mycobcterium smegmatis''<br /> | ||
| + | **[[7vh4]] - EcORNase <br /> | ||
| + | |||
| + | *Oligoribonuclease complex | ||
| + | |||
| + | **[[6j7y]], [[6j7z]], [[6j80]], [[6rcn]] - hORNase + DNA<br /> | ||
| + | **[[6rcl]], [[6sty]] - hORNase + RNA<br /> | ||
| + | **[[6nkl]] - HiORNase + VAPB1<br /> | ||
| + | **[[6n6a]], [[6n6c]], [[6n6d]], [[6n6e]], [[6n6f]], [[6n6g]], [[6n6h]], [[6n6i]], [[6n6j]], [[6n6k]] - VcORNase + RNA<br /> | ||
| + | **[[6a4e]] - CpORNase (mutant) + RNA <br /> | ||
| + | **[[6a4d]] - CpORNase (mutant) + PNP-TMP<br /> | ||
| + | **[[6a4f]] - CpORNase + UMP<br /> | ||
| + | **[[7va3]], [[7va6]] - PaORNase (mutant) + RNA <br /> | ||
| + | **[[7va2]] - PaORNase (mutant) + GMP <br /> | ||
*NanoRNase or bifunctional oligoribonuclease and PAP phosphatase nRNA | *NanoRNase or bifunctional oligoribonuclease and PAP phosphatase nRNA | ||
| Line 410: | Line 491: | ||
**[[5izo]] - BsNNase (mutant) <br /> | **[[5izo]] - BsNNase (mutant) <br /> | ||
**[[5cet]] - MtNNase <br /> | **[[5cet]] - MtNNase <br /> | ||
| + | **[[7mpr]], [[7mps]], [[7mpt]] - BmNNase C – ''Brucella melitensis''<br /> | ||
| + | **[[7mpu]] - BmNNase C + GG<br /> | ||
| + | **[[7mpl]], [[7mpm]], [[7mpn]], [[7mpo]], [[7mpp]], [[7mpq]], [[7mqb]], [[7mqc]], [[7mqd]], [[7mqe]] [[7mqf]], [[7mqg]], [[7mqh]], [[7mqi]] - NNase C + RNA – ''Bartonella henselae''<br /> | ||
| - | *Polynucleotide phosphorylase | + | *Polynucleotide phosphorylase or Polyribonucleotide nucleotidyltransferase |
| - | **[[3cdi]] - EcPNPase<br /> | + | **[[3u1k]], [[5zf6]] - hPNPase<br /> |
| + | **[[3cdi]], [[7ogl]] - EcPNPase<br /> | ||
**[[3gll]] - EcPNPase core<br /> | **[[3gll]] - EcPNPase core<br /> | ||
**[[3cdj]] - EcPNPase C terminal truncated<br /> | **[[3cdj]] - EcPNPase C terminal truncated<br /> | ||
| - | **[[1sro]] - EcPNPase RNA-binding domain - NMR<br /> | + | **[[1sro]], [[6qh2]] - EcPNPase RNA-binding domain - NMR<br /> |
**[[3gcm]], [[3gme]], [[3h1c]] - EcPNPase + RNase E recognition domain<br /> | **[[3gcm]], [[3gme]], [[3h1c]] - EcPNPase + RNase E recognition domain<br /> | ||
| + | **[[7ogk]] - EcPNPase + RNA - CryoEM<br /> | ||
| + | **[[7ogm]] - EcPNPase + Hfq + RNA - CryoEM<br /> | ||
**[[1e3h]], [[1e3p]] - PNPase - ''Streptomyces antibioticus''<br /> | **[[1e3h]], [[1e3p]] - PNPase - ''Streptomyces antibioticus''<br /> | ||
**[[3h36]] - PNPase fragment - ''Streptomyces mutans''<br /> | **[[3h36]] - PNPase fragment - ''Streptomyces mutans''<br /> | ||
**[[4nbq]] - CbPNPase<br /> | **[[4nbq]] - CbPNPase<br /> | ||
| - | **[[4am3]] - | + | **[[4am3]] - CvPNPase + RNA - ''Caulobacter vibrioides''<br /> |
| + | **[[4aid]], [[4aim]] - CvPNPase + RNAse E peptide <br /> | ||
| + | **[[7ld5]] - MsPNPase + RNA <br /> | ||
| + | **[[6d6k]] - AbPNPase<br /> | ||
| + | **[[5yjj]] - SePNPase<br /> | ||
| + | **[[5xex]] – SaPNPase catalytic domain<br /> | ||
*Binase | *Binase | ||
| Line 453: | Line 545: | ||
**[[6tnn]] - BsMRNase in 50S ribosome – Cryo EM<br /> | **[[6tnn]] - BsMRNase in 50S ribosome – Cryo EM<br /> | ||
| + | **[[4oun]] - BsMRNase 3<br /> | ||
*Other RNases | *Other RNases | ||
| - | **[[6ttc]], [[6tcd]] – | + | **[[6ttc]], [[6tcd]] – saRnase<br /> |
**[[2zpo]] - RNase - ''Chelonia mydas''<br /> | **[[2zpo]] - RNase - ''Chelonia mydas''<br /> | ||
**[[3iek]] - TtRNase - ''Thermus thermophilus''<br /> | **[[3iek]] - TtRNase - ''Thermus thermophilus''<br /> | ||
Current revision
3D Structures of Ribonuclease
Updated on 18-October-2023
