This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3a7o

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (14:13, 18 October 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==The crystal structure of the coiled-coil domain of Saccharomyces cerevisiae Atg16==
==The crystal structure of the coiled-coil domain of Saccharomyces cerevisiae Atg16==
-
<StructureSection load='3a7o' size='340' side='right' caption='[[3a7o]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
+
<StructureSection load='3a7o' size='340' side='right'caption='[[3a7o]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3a7o]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_18824 Atcc 18824]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A7O OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3A7O FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3a7o]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A7O OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3A7O FirstGlance]. <br>
-
</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3a7p|3a7p]]</td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ATG16 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 ATCC 18824])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3a7o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a7o OCA], [https://pdbe.org/3a7o PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3a7o RCSB], [https://www.ebi.ac.uk/pdbsum/3a7o PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3a7o ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3a7o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a7o OCA], [http://pdbe.org/3a7o PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3a7o RCSB], [http://www.ebi.ac.uk/pdbsum/3a7o PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3a7o ProSAT]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/ATG16_YEAST ATG16_YEAST]] Stabilizes the ATG5-ATG12 conjugate and mediates the formation of the 350 kDa complex, which is necessary for autophagy. Required for ATG8 localization to the pre-autophagosomal structure.<ref>PMID:8224160</ref> <ref>PMID:8663607</ref> <ref>PMID:10406794</ref> <ref>PMID:11689437</ref> <ref>PMID:11897782</ref>
+
[https://www.uniprot.org/uniprot/ATG16_YEAST ATG16_YEAST] Stabilizes the ATG5-ATG12 conjugate and mediates the formation of the 350 kDa complex, which is necessary for autophagy. Required for ATG8 localization to the pre-autophagosomal structure.<ref>PMID:8224160</ref> <ref>PMID:8663607</ref> <ref>PMID:10406794</ref> <ref>PMID:11689437</ref> <ref>PMID:11897782</ref>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 22: Line 21:
==See Also==
==See Also==
-
*[[Autophagy-related protein|Autophagy-related protein]]
+
*[[Autophagy-related protein 3D structures|Autophagy-related protein 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Atcc 18824]]
+
[[Category: Large Structures]]
-
[[Category: Fujioka, Y]]
+
[[Category: Saccharomyces cerevisiae]]
-
[[Category: Inagaki, F]]
+
[[Category: Fujioka Y]]
-
[[Category: Noda, N N]]
+
[[Category: Inagaki F]]
-
[[Category: Autophagy]]
+
[[Category: Noda NN]]
-
[[Category: Coiled coil]]
+
-
[[Category: Coiled-coil]]
+
-
[[Category: Cytoplasmic vesicle]]
+
-
[[Category: Protein transport]]
+
-
[[Category: Transport]]
+
-
[[Category: Vacuole]]
+

Current revision

The crystal structure of the coiled-coil domain of Saccharomyces cerevisiae Atg16

PDB ID 3a7o

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools