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6xpw

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Current revision (14:58, 18 October 2023) (edit) (undo)
 
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<StructureSection load='6xpw' size='340' side='right'caption='[[6xpw]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
<StructureSection load='6xpw' size='340' side='right'caption='[[6xpw]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[6xpw]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Aspfu Aspfu]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6XPW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6XPW FirstGlance]. <br>
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<table><tr><td colspan='2'>[[6xpw]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Aspergillus_fumigatus_Af293 Aspergillus fumigatus Af293]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6XPW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6XPW FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CDP:CYTIDINE-5-DIPHOSPHATE'>CDP</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[6xp4|6xp4]], [[6xp7|6xp7]], [[6xps|6xps]], [[6xpt|6xpt]], [[6xpu|6xpu]], [[6xpv|6xpv]]</div></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CDP:CYTIDINE-5-DIPHOSPHATE'>CDP</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ndk1, AFUA_5G03490 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=330879 ASPFU])</td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Nucleoside-diphosphate_kinase Nucleoside-diphosphate kinase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.4.6 2.7.4.6] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6xpw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6xpw OCA], [https://pdbe.org/6xpw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6xpw RCSB], [https://www.ebi.ac.uk/pdbsum/6xpw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6xpw ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6xpw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6xpw OCA], [https://pdbe.org/6xpw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6xpw RCSB], [https://www.ebi.ac.uk/pdbsum/6xpw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6xpw ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
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[[https://www.uniprot.org/uniprot/NDK_ASPFU NDK_ASPFU]] Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate.
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[https://www.uniprot.org/uniprot/NDK_ASPFU NDK_ASPFU] Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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</div>
</div>
<div class="pdbe-citations 6xpw" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 6xpw" style="background-color:#fffaf0;"></div>
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==See Also==
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*[[Nucleoside diphosphate kinase 3D structures|Nucleoside diphosphate kinase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Aspfu]]
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[[Category: Aspergillus fumigatus Af293]]
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Nucleoside-diphosphate kinase]]
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[[Category: Bruning JB]]
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[[Category: Bruning, J B]]
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[[Category: Nguyen S]]
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[[Category: Nguyen, S]]
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[[Category: Kinase]]
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[[Category: Nucleoside diphosphate kinase]]
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[[Category: Phosphotransferase]]
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[[Category: Transferase]]
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Current revision

Nucleoside Diphosphate Kinase from Aspergillus fumgiatus Af293 bound to CDP

PDB ID 6xpw

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OCA

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