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7m14

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Current revision (16:03, 18 October 2023) (edit) (undo)
 
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<StructureSection load='7m14' size='340' side='right'caption='[[7m14]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
<StructureSection load='7m14' size='340' side='right'caption='[[7m14]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[7m14]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Camje Camje]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7M14 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7M14 FirstGlance]. <br>
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<table><tr><td colspan='2'>[[7m14]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Campylobacter_jejuni_subsp._jejuni_NCTC_11168_=_ATCC_700819 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7M14 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7M14 FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GDP:GUANOSINE-5-DIPHOSPHATE'>GDP</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">rfbC, Cj1430c ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=192222 CAMJE])</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GDP:GUANOSINE-5-DIPHOSPHATE'>GDP</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/dTDP-4-dehydrorhamnose_3,5-epimerase dTDP-4-dehydrorhamnose 3,5-epimerase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.1.3.13 5.1.3.13] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7m14 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7m14 OCA], [https://pdbe.org/7m14 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7m14 RCSB], [https://www.ebi.ac.uk/pdbsum/7m14 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7m14 ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7m14 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7m14 OCA], [https://pdbe.org/7m14 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7m14 RCSB], [https://www.ebi.ac.uk/pdbsum/7m14 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7m14 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
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[[https://www.uniprot.org/uniprot/Q0P8I4_CAMJE Q0P8I4_CAMJE]] Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose.[ARBA:ARBA00001997]
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[https://www.uniprot.org/uniprot/Q0P8I4_CAMJE Q0P8I4_CAMJE] Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose.[ARBA:ARBA00001997]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Camje]]
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[[Category: Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]]
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: DTDP-4-dehydrorhamnose 3,5-epimerase]]
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[[Category: Girardi NM]]
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[[Category: Girardi, N M]]
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[[Category: Holden HM]]
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[[Category: Holden, H M]]
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[[Category: Raushel FM]]
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[[Category: Raushel, F M]]
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[[Category: Thoden JB]]
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[[Category: Thoden, J B]]
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[[Category: 5-epimerase]]
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[[Category: Capsular polycassharide]]
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[[Category: Isomerase]]
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Current revision

x-ray structure of cj1430 in the presence of GDP, a GDP-D-glycero-4-keto-D-lyxo-heptose-3,5-epimerase from campylobacter jejuni

PDB ID 7m14

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