7txp

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "7txp" [edit=sysop:move=sysop])
Current revision (17:09, 18 October 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 7txp is ON HOLD
+
==X-ray structure of the VioB N-acetyltransferase from Acinetobacter baumannii in complex with TDP-4-amino-4,6-dideoxy-D-glucose==
 +
<StructureSection load='7txp' size='340' side='right'caption='[[7txp]], [[Resolution|resolution]] 1.45&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[7txp]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Acinetobacter_baumannii Acinetobacter baumannii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7TXP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7TXP FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.45&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=0FX:DTDP-4-AMINO-4,6-DIDEOXYGLUCOSE'>0FX</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7txp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7txp OCA], [https://pdbe.org/7txp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7txp RCSB], [https://www.ebi.ac.uk/pdbsum/7txp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7txp ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/A0A334FGR6_ACIBA A0A334FGR6_ACIBA]
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Acinetobacter baumannii is a Gram-negative bacterium commonly found in soil and water that can cause human infections of the blood, lungs, and urinary tract. Of particular concern is its prevalence in healthcare settings where it can survive on surfaces and shared equipment for extended periods of time. The capsular polysaccharide surrounding the organism is known to be the major contributor to virulence. The structure of the K57 capsular polysaccharide produced by A. baumannii isolate BAL_212 from Vietnam was recently shown to contain the rare sugar 4-acetamido-4,6-dideoxy-d-glucose. Three enzymes are required for its biosynthesis, one of which is encoded by the gene H6W49_RS17300 and referred to as VioB, a putative N-acetyltransferase. Here we describe a combined structural and functional analysis of VioB. Kinetic analyses show that the enzyme does, indeed, function on dTDP-4-amino-4,6-dideoxy-d-glucose with a catalytic efficiency of 3.9 x 10(4) M(-1) s(-1) (+/- 6000), albeit at a reduced value compared to similar enzymes. Three high-resolution X-ray structures of various enzyme/ligand complexes were determined to resolutions of 1.65 A or better. One of these models represents an intermediate analogue of the tetrahedral transition state. Differences between the VioB structure and those determined for the N-acetyltransferases from Campylobacter jejuni (PglD), Caulobacter crescentus (PerB), and Psychrobacter cryohalolentis (Pcryo_0637) are highlighted. Taken together this investigation sheds new insight into the Type I sugar N-acetyltransferases. This article is protected by copyright. All rights reserved.
-
Authors: Herkert, N.R., Thoden, J.B., Holden, H.M.
+
Structure and Function of an N-acetyltransferase from the Human Pathogen Acinetobacter baumannii Isolate BAL_212.,Herkert NR, Thoden JB, Holden HM Proteins. 2022 Mar 11. doi: 10.1002/prot.26334. PMID:35277885<ref>PMID:35277885</ref>
-
Description: X-ray structure of the VioB N-acetyltransferase from Acinetobacter baumannii in complex with TDP-4-amino-4,6-dideoxy-D-glucose
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
[[Category: Unreleased Structures]]
+
</div>
-
[[Category: Thoden, J.B]]
+
<div class="pdbe-citations 7txp" style="background-color:#fffaf0;"></div>
-
[[Category: Holden, H.M]]
+
== References ==
-
[[Category: Herkert, N.R]]
+
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Acinetobacter baumannii]]
 +
[[Category: Large Structures]]
 +
[[Category: Herkert NR]]
 +
[[Category: Holden HM]]
 +
[[Category: Thoden JB]]

Current revision

X-ray structure of the VioB N-acetyltransferase from Acinetobacter baumannii in complex with TDP-4-amino-4,6-dideoxy-D-glucose

PDB ID 7txp

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools