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1j2b

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Current revision (07:14, 25 October 2023) (edit) (undo)
 
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<StructureSection load='1j2b' size='340' side='right'caption='[[1j2b]], [[Resolution|resolution]] 3.30&Aring;' scene=''>
<StructureSection load='1j2b' size='340' side='right'caption='[[1j2b]], [[Resolution|resolution]] 3.30&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[1j2b]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/'pyrococcus_shinkaii' 'pyrococcus shinkaii']. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1J2B OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1J2B FirstGlance]. <br>
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<table><tr><td colspan='2'>[[1j2b]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1J2B OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1J2B FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.3&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1iq8|1iq8]]</div></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/tRNA-guanine(34)_transglycosylase tRNA-guanine(34) transglycosylase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.2.29 2.4.2.29] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1j2b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1j2b OCA], [https://pdbe.org/1j2b PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1j2b RCSB], [https://www.ebi.ac.uk/pdbsum/1j2b PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1j2b ProSAT], [https://www.topsan.org/Proteins/RSGI/1j2b TOPSAN]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1j2b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1j2b OCA], [https://pdbe.org/1j2b PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1j2b RCSB], [https://www.ebi.ac.uk/pdbsum/1j2b PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1j2b ProSAT], [https://www.topsan.org/Proteins/RSGI/1j2b TOPSAN]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
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[[https://www.uniprot.org/uniprot/ATGT_PYRHO ATGT_PYRHO]] Exchanges the guanine residue with 7-cyano-7-deazaguanine (preQ0) at position 15 in the dihydrouridine loop (D-loop) of archaeal tRNAs.[HAMAP-Rule:MF_01634]
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[https://www.uniprot.org/uniprot/ATGT_PYRHO ATGT_PYRHO] Exchanges the guanine residue with 7-cyano-7-deazaguanine (preQ0) at position 15 in the dihydrouridine loop (D-loop) of archaeal tRNAs.[HAMAP-Rule:MF_01634]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
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==See Also==
==See Also==
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*[[TRNA-guanine transglycosylase|TRNA-guanine transglycosylase]]
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*[[TRNA-guanine transglycosylase 3D structures|TRNA-guanine transglycosylase 3D structures]]
*[[Transfer RNA (tRNA)|Transfer RNA (tRNA)]]
*[[Transfer RNA (tRNA)|Transfer RNA (tRNA)]]
== References ==
== References ==
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Pyrococcus shinkaii]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Ishitani, R]]
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[[Category: Pyrococcus horikoshii]]
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[[Category: Nameki, N]]
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[[Category: Ishitani R]]
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[[Category: Nishimura, S]]
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[[Category: Nameki N]]
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[[Category: Nureki, O]]
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[[Category: Nishimura S]]
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[[Category: Okada, N]]
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[[Category: Nureki O]]
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[[Category: Structural genomic]]
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[[Category: Okada N]]
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[[Category: Yokoyama, S]]
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[[Category: Yokoyama S]]
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[[Category: Rsgi]]
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[[Category: Transferase]]
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[[Category: Transferase-rna complex]]
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Current revision

Crystal Structure Of Archaeosine tRNA-Guanine Transglycosylase Complexed With lambda-form tRNA(Val)

PDB ID 1j2b

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