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1jlk

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(New page: 200px<br /><applet load="1jlk" size="450" color="white" frame="true" align="right" spinBox="true" caption="1jlk, resolution 2.30&Aring;" /> '''Crystal structure of...)
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[[Image:1jlk.gif|left|200px]]<br /><applet load="1jlk" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1jlk, resolution 2.30&Aring;" />
 
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'''Crystal structure of the Mn(2+)-bound form of response regulator Rcp1'''<br />
 
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==Overview==
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==Crystal structure of the Mn(2+)-bound form of response regulator Rcp1==
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The two-component signal transduction pathway widespread in prokaryotes, fungi, molds, and some plants involves an elaborate phosphorelay cascade., Rcp1 is the phosphate receiver module in a two-component system, controlling the light response of cyanobacteria Synechocystis sp. via, cyanobacterial phytochrome Cph1, which recognizes Rcp1 and transfers its, phosphoryl group to an aspartate residue in response to light. Here we, describe the crystal structure of Rcp1 refined to a crystallographic, R-factor of 18.8% at a resolution of 1.9 A. The structure reveals a, tightly associated homodimer with monomers comprised of doubly wound, five-stranded parallel beta-sheets forming a single-domain protein, homologous with the N-terminal activator domain of other response, regulators (e.g., chemotaxis protein CheY). The three-dimensional, structure of Rcp1 appears consistent with the conserved activation, mechanism of phosphate receiver proteins, although in this case, the, C-terminal half of its regulatory domain, which undergoes structural, changes upon phosphorylation, contributes to the dimerization interface., The involvement of the residues undergoing phosphorylation-induced, conformational changes at the dimeric interface suggests that dimerization, of Rcp1 may be regulated by phosphorylation, which could affect the, interaction of Rcp1 with downstream target molecules.
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<StructureSection load='1jlk' size='340' side='right'caption='[[1jlk]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1jlk]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Synechocystis_sp._PCC_6803 Synechocystis sp. PCC 6803]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JLK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1JLK FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1jlk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jlk OCA], [https://pdbe.org/1jlk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1jlk RCSB], [https://www.ebi.ac.uk/pdbsum/1jlk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1jlk ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/RCP1_SYNY3 RCP1_SYNY3] Forms a two-component system with cph1 in which it acts as receiver substrate.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jl/1jlk_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1jlk ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The two-component signal transduction pathway widespread in prokaryotes, fungi, molds, and some plants involves an elaborate phosphorelay cascade. Rcp1 is the phosphate receiver module in a two-component system controlling the light response of cyanobacteria Synechocystis sp. via cyanobacterial phytochrome Cph1, which recognizes Rcp1 and transfers its phosphoryl group to an aspartate residue in response to light. Here we describe the crystal structure of Rcp1 refined to a crystallographic R-factor of 18.8% at a resolution of 1.9 A. The structure reveals a tightly associated homodimer with monomers comprised of doubly wound five-stranded parallel beta-sheets forming a single-domain protein homologous with the N-terminal activator domain of other response regulators (e.g., chemotaxis protein CheY). The three-dimensional structure of Rcp1 appears consistent with the conserved activation mechanism of phosphate receiver proteins, although in this case, the C-terminal half of its regulatory domain, which undergoes structural changes upon phosphorylation, contributes to the dimerization interface. The involvement of the residues undergoing phosphorylation-induced conformational changes at the dimeric interface suggests that dimerization of Rcp1 may be regulated by phosphorylation, which could affect the interaction of Rcp1 with downstream target molecules.
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==About this Structure==
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Crystal structure of a cyanobacterial phytochrome response regulator.,Im YJ, Rho SH, Park CM, Yang SS, Kang JG, Lee JY, Song PS, Eom SH Protein Sci. 2002 Mar;11(3):614-24. PMID:11847283<ref>PMID:11847283</ref>
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1JLK is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Synechocystis_sp. Synechocystis sp.] with SO4 and MN as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1JLK OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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Crystal structure of a cyanobacterial phytochrome response regulator., Im YJ, Rho SH, Park CM, Yang SS, Kang JG, Lee JY, Song PS, Eom SH, Protein Sci. 2002 Mar;11(3):614-24. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=11847283 11847283]
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</div>
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[[Category: Single protein]]
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<div class="pdbe-citations 1jlk" style="background-color:#fffaf0;"></div>
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[[Category: Synechocystis sp.]]
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[[Category: Eom, S.H.]]
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[[Category: Im, Y.J.]]
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[[Category: Kang, J.G.]]
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[[Category: Lee, J.Y.]]
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[[Category: Park, C.M.]]
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[[Category: Rho, S.H.]]
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[[Category: Song, P.S.]]
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[[Category: Yang, S.S.]]
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[[Category: MN]]
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[[Category: SO4]]
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[[Category: cph1]]
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[[Category: cyanobacterial phytochrome]]
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[[Category: rcp1]]
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[[Category: response regulator]]
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[[Category: two-component system]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Nov 20 18:21:52 2007''
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==See Also==
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*[[Response regulator 3D structure|Response regulator 3D structure]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Synechocystis sp. PCC 6803]]
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[[Category: Eom SH]]
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[[Category: Im YJ]]
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[[Category: Kang J-G]]
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[[Category: Lee JY]]
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[[Category: Park C-M]]
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[[Category: Rho S-H]]
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[[Category: Song P-S]]
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[[Category: Yang S-S]]

Current revision

Crystal structure of the Mn(2+)-bound form of response regulator Rcp1

PDB ID 1jlk

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