This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1n77

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:19, 25 October 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='1n77' size='340' side='right'caption='[[1n77]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
<StructureSection load='1n77' size='340' side='right'caption='[[1n77]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1n77]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/"flavobacterium_thermophilum"_yoshida_and_oshima_1971 "flavobacterium thermophilum" yoshida and oshima 1971]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1N77 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1N77 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1n77]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1N77 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1N77 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1g59|1g59]], [[1gln|1gln]], [[1j09|1j09]], [[1n75|1n75]], [[1n78|1n78]]</div></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Glutamate--tRNA_ligase Glutamate--tRNA ligase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.1.1.17 6.1.1.17] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1n77 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1n77 OCA], [https://pdbe.org/1n77 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1n77 RCSB], [https://www.ebi.ac.uk/pdbsum/1n77 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1n77 ProSAT], [https://www.topsan.org/Proteins/RSGI/1n77 TOPSAN]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1n77 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1n77 OCA], [https://pdbe.org/1n77 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1n77 RCSB], [https://www.ebi.ac.uk/pdbsum/1n77 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1n77 ProSAT], [https://www.topsan.org/Proteins/RSGI/1n77 TOPSAN]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[https://www.uniprot.org/uniprot/SYE_THET8 SYE_THET8]] Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu).<ref>PMID:11224561</ref> <ref>PMID:17161369</ref>
+
[https://www.uniprot.org/uniprot/SYE_THET8 SYE_THET8] Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu).<ref>PMID:11224561</ref> <ref>PMID:17161369</ref>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 38: Line 37:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Flavobacterium thermophilum yoshida and oshima 1971]]
 
-
[[Category: Glutamate--tRNA ligase]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Bernier, S]]
+
[[Category: Thermus thermophilus]]
-
[[Category: Chenevert, R]]
+
[[Category: Bernier S]]
-
[[Category: Dubois, D Y]]
+
[[Category: Chenevert R]]
-
[[Category: Lapointe, J]]
+
[[Category: Dubois DY]]
-
[[Category: Nureki, O]]
+
[[Category: Lapointe J]]
-
[[Category: Structural genomic]]
+
[[Category: Nureki O]]
-
[[Category: Sekine, S]]
+
[[Category: Sekine S]]
-
[[Category: Vassylyev, D G]]
+
[[Category: Vassylyev DG]]
-
[[Category: Yokoyama, S]]
+
[[Category: Yokoyama S]]
-
[[Category: Ers/trna/atp]]
+
-
[[Category: Ligase-rna complex]]
+
-
[[Category: Rsgi]]
+

Current revision

Crystal structure of Thermus thermophilus glutamyl-tRNA synthetase complexed with tRNA(Glu) and ATP.

PDB ID 1n77

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1n77"
Personal tools