This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1ssh

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:26, 25 October 2023) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1ssh.gif|left|200px]]
 
-
{{Structure
+
==Crystal structure of the SH3 domain from a S. cerevisiae hypothetical 40.4 kDa protein in complex with a peptide==
-
|PDB= 1ssh |SIZE=350|CAPTION= <scene name='initialview01'>1ssh</scene>, resolution 1.40&Aring;
+
<StructureSection load='1ssh' size='340' side='right'caption='[[1ssh]], [[Resolution|resolution]] 1.40&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND=
+
<table><tr><td colspan='2'>[[1ssh]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae] and [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae_S288C Saccharomyces cerevisiae S288C]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SSH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1SSH FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.4&#8491;</td></tr>
-
|GENE=
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ssh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ssh OCA], [https://pdbe.org/1ssh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ssh RCSB], [https://www.ebi.ac.uk/pdbsum/1ssh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ssh ProSAT]</span></td></tr>
-
|DOMAIN=
+
</table>
-
|RELATEDENTRY=[[1oot|1OOT]], [[1ruw|1RUW]], [[1va7|1VA7]]
+
== Function ==
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ssh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ssh OCA], [http://www.ebi.ac.uk/pdbsum/1ssh PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1ssh RCSB]</span>
+
[https://www.uniprot.org/uniprot/LSB3_YEAST LSB3_YEAST]
-
}}
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
'''Crystal structure of the SH3 domain from a S. cerevisiae hypothetical 40.4 kDa protein in complex with a peptide'''
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
 
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ss/1ssh_consurf.spt"</scriptWhenChecked>
-
==About this Structure==
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
1SSH is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SSH OCA].
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Protein complex]]
+
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ssh ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Saccharomyces cerevisiae]]
[[Category: Saccharomyces cerevisiae]]
-
[[Category: Kursula, I.]]
+
[[Category: Saccharomyces cerevisiae S288C]]
-
[[Category: Kursula, P.]]
+
[[Category: Kursula I]]
-
[[Category: Lehmann, F.]]
+
[[Category: Kursula P]]
-
[[Category: Song, Y H.]]
+
[[Category: Lehmann F]]
-
[[Category: Wilmanns, M.]]
+
[[Category: Song Y-H]]
-
[[Category: protein-peptide complex]]
+
[[Category: Wilmanns M]]
-
[[Category: sh3 domain]]
+
-
[[Category: structural genomic]]
+
-
[[Category: yeast]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 23:46:22 2008''
+

Current revision

Crystal structure of the SH3 domain from a S. cerevisiae hypothetical 40.4 kDa protein in complex with a peptide

PDB ID 1ssh

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools