This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1u08

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:29, 25 October 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==Crystal Structure and Reactivity of YbdL from Escherichia coli Identify a Methionine Aminotransferase Function.==
==Crystal Structure and Reactivity of YbdL from Escherichia coli Identify a Methionine Aminotransferase Function.==
-
<StructureSection load='1u08' size='340' side='right' caption='[[1u08]], [[Resolution|resolution]] 2.35&Aring;' scene=''>
+
<StructureSection load='1u08' size='340' side='right'caption='[[1u08]], [[Resolution|resolution]] 2.35&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1u08]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1U08 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1U08 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1u08]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1U08 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1U08 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.35&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1dju|1dju]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ybdL ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1u08 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1u08 OCA], [https://pdbe.org/1u08 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1u08 RCSB], [https://www.ebi.ac.uk/pdbsum/1u08 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1u08 ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1u08 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1u08 OCA], [http://pdbe.org/1u08 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1u08 RCSB], [http://www.ebi.ac.uk/pdbsum/1u08 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1u08 ProSAT]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/YBDL_ECOLI YBDL_ECOLI]] Shows aminotransferase activity with methionine and histidine as substrates, and to a lesser extent also with phenylalanine.
+
[https://www.uniprot.org/uniprot/YBDL_ECOLI YBDL_ECOLI] Shows aminotransferase activity with methionine and histidine as substrates, and to a lesser extent also with phenylalanine.
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 34: Line 33:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Bacillus coli migula 1895]]
+
[[Category: Escherichia coli]]
-
[[Category: Cambillau, C]]
+
[[Category: Large Structures]]
-
[[Category: Campanacci, V]]
+
[[Category: Cambillau C]]
-
[[Category: Dolzan, M]]
+
[[Category: Campanacci V]]
-
[[Category: Johansson, K]]
+
[[Category: Dolzan M]]
-
[[Category: Roig-Zamboni, V]]
+
[[Category: Johansson K]]
-
[[Category: Schneider, G]]
+
[[Category: Roig-Zamboni V]]
-
[[Category: Tegoni, M]]
+
[[Category: Schneider G]]
-
[[Category: Alpha beta protein]]
+
[[Category: Tegoni M]]
-
[[Category: Transferase]]
+

Current revision

Crystal Structure and Reactivity of YbdL from Escherichia coli Identify a Methionine Aminotransferase Function.

PDB ID 1u08

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools