This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1v6c

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:48, 25 October 2023) (edit) (undo)
 
(13 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1v6c.jpg|left|200px]]<br /><applet load="1v6c" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="1v6c, resolution 1.80&Aring;" />
 
-
'''Crystal Structure of Psychrophilic Subtilisin-like Protease Apa1 from Antarctic Psychrotroph Pseudoalteromonas sp. AS-11'''<br />
 
-
==About this Structure==
+
==Crystal Structure of Psychrophilic Subtilisin-like Protease Apa1 from Antarctic Psychrotroph Pseudoalteromonas sp. AS-11==
-
1V6C is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Pseudoalteromonas_sp._as-11 Pseudoalteromonas sp. as-11] with <scene name='pdbligand=CA:'>CA</scene>, <scene name='pdbligand=SO4:'>SO4</scene> and <scene name='pdbligand=PMS:'>PMS</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V6C OCA].
+
<StructureSection load='1v6c' size='340' side='right'caption='[[1v6c]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-
[[Category: Pseudoalteromonas sp. as-11]]
+
== Structural highlights ==
-
[[Category: Single protein]]
+
<table><tr><td colspan='2'>[[1v6c]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudoalteromonas_sp._AS-11 Pseudoalteromonas sp. AS-11]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V6C OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1V6C FirstGlance]. <br>
-
[[Category: Dong, D.]]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-
[[Category: Ihara, T.]]
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=PMS:PHENYLMETHANESULFONIC+ACID'>PMS</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
[[Category: Motoshima, H.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1v6c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v6c OCA], [https://pdbe.org/1v6c PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1v6c RCSB], [https://www.ebi.ac.uk/pdbsum/1v6c PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1v6c ProSAT]</span></td></tr>
-
[[Category: Watanabe, K.]]
+
</table>
-
[[Category: CA]]
+
== Function ==
-
[[Category: PMS]]
+
[https://www.uniprot.org/uniprot/Q65Z69_9GAMM Q65Z69_9GAMM]
-
[[Category: SO4]]
+
== Evolutionary Conservation ==
-
[[Category: insert domain]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: parallel-antiparallel-barrel]]
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 15:31:56 2008''
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/v6/1v6c_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1v6c ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Pseudoalteromonas sp. AS-11]]
 +
[[Category: Dong D]]
 +
[[Category: Ihara T]]
 +
[[Category: Motoshima H]]
 +
[[Category: Watanabe K]]

Current revision

Crystal Structure of Psychrophilic Subtilisin-like Protease Apa1 from Antarctic Psychrotroph Pseudoalteromonas sp. AS-11

PDB ID 1v6c

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools