This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1v6c

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:48, 25 October 2023) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1v6c.jpg|left|200px]]
 
-
<!--
+
==Crystal Structure of Psychrophilic Subtilisin-like Protease Apa1 from Antarctic Psychrotroph Pseudoalteromonas sp. AS-11==
-
The line below this paragraph, containing "STRUCTURE_1v6c", creates the "Structure Box" on the page.
+
<StructureSection load='1v6c' size='340' side='right'caption='[[1v6c]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1v6c]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudoalteromonas_sp._AS-11 Pseudoalteromonas sp. AS-11]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V6C OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1V6C FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=PMS:PHENYLMETHANESULFONIC+ACID'>PMS</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
{{STRUCTURE_1v6c| PDB=1v6c | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1v6c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v6c OCA], [https://pdbe.org/1v6c PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1v6c RCSB], [https://www.ebi.ac.uk/pdbsum/1v6c PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1v6c ProSAT]</span></td></tr>
-
 
+
</table>
-
'''Crystal Structure of Psychrophilic Subtilisin-like Protease Apa1 from Antarctic Psychrotroph Pseudoalteromonas sp. AS-11'''
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/Q65Z69_9GAMM Q65Z69_9GAMM]
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
1V6C is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bacteria Bacteria]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V6C OCA].
+
Check<jmol>
-
[[Category: Bacteria]]
+
<jmolCheckbox>
-
[[Category: Single protein]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/v6/1v6c_consurf.spt"</scriptWhenChecked>
-
[[Category: Dong, D.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Ihara, T.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Motoshima, H.]]
+
</jmolCheckbox>
-
[[Category: Watanabe, K.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1v6c ConSurf].
-
[[Category: Insert domain]]
+
<div style="clear:both"></div>
-
[[Category: Parallel-antiparallel-barrel]]
+
__TOC__
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May 3 12:08:25 2008''
+
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Pseudoalteromonas sp. AS-11]]
 +
[[Category: Dong D]]
 +
[[Category: Ihara T]]
 +
[[Category: Motoshima H]]
 +
[[Category: Watanabe K]]

Current revision

Crystal Structure of Psychrophilic Subtilisin-like Protease Apa1 from Antarctic Psychrotroph Pseudoalteromonas sp. AS-11

PDB ID 1v6c

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1v6c"
Personal tools