1v6s

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:48, 25 October 2023) (edit) (undo)
 
(13 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1v6s.jpg|left|200px]]
 
-
{{Structure
+
==Crystal Structure of Phosphoglycerate Kinase from Thermus thermophilus HB8==
-
|PDB= 1v6s |SIZE=350|CAPTION= <scene name='initialview01'>1v6s</scene>, resolution 1.50&Aring;
+
<StructureSection load='1v6s' size='340' side='right'caption='[[1v6s]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>
+
<table><tr><td colspan='2'>[[1v6s]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V6S OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1V6S FirstGlance]. <br>
-
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Phosphoglycerate_kinase Phosphoglycerate kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.2.3 2.7.2.3] </span>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5&#8491;</td></tr>
-
|GENE=
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-
|DOMAIN=
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1v6s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v6s OCA], [https://pdbe.org/1v6s PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1v6s RCSB], [https://www.ebi.ac.uk/pdbsum/1v6s PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1v6s ProSAT], [https://www.topsan.org/Proteins/RSGI/1v6s TOPSAN]</span></td></tr>
-
|RELATEDENTRY=
+
</table>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1v6s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v6s OCA], [http://www.ebi.ac.uk/pdbsum/1v6s PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1v6s RCSB]</span>
+
== Function ==
-
}}
+
[https://www.uniprot.org/uniprot/PGK_THET8 PGK_THET8]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/v6/1v6s_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1v6s ConSurf].
 +
<div style="clear:both"></div>
-
'''Crystal Structure of Phosphoglycerate Kinase from Thermus thermophilus HB8'''
+
==See Also==
-
 
+
*[[Phosphoglycerate kinase 3D structures|Phosphoglycerate kinase 3D structures]]
-
 
+
__TOC__
-
==About this Structure==
+
</StructureSection>
-
1V6S is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V6S OCA].
+
[[Category: Large Structures]]
-
[[Category: Phosphoglycerate kinase]]
+
-
[[Category: Single protein]]
+
[[Category: Thermus thermophilus]]
[[Category: Thermus thermophilus]]
-
[[Category: Kunishima, N.]]
+
[[Category: Kunishima N]]
-
[[Category: Mizutani, H.]]
+
[[Category: Mizutani H]]
-
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+
-
[[Category: phosphoglycerate kinase]]
+
-
[[Category: riken structural genomics/proteomics initiative]]
+
-
[[Category: rsgi]]
+
-
[[Category: structural genomic]]
+
-
[[Category: thermus thermophilus]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 00:20:12 2008''
+

Current revision

Crystal Structure of Phosphoglycerate Kinase from Thermus thermophilus HB8

PDB ID 1v6s

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools