This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
1vax
From Proteopedia
(Difference between revisions)
(New page: 200px<br /><applet load="1vax" size="450" color="white" frame="true" align="right" spinBox="true" caption="1vax, resolution 1.99Å" /> '''Crystal Structure of...) |
|||
| (13 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:1vax.gif|left|200px]]<br /><applet load="1vax" size="450" color="white" frame="true" align="right" spinBox="true" | ||
| - | caption="1vax, resolution 1.99Å" /> | ||
| - | '''Crystal Structure of Uricase from Arthrobacter globiformis'''<br /> | ||
| - | == | + | ==Crystal Structure of Uricase from Arthrobacter globiformis== |
| - | + | <StructureSection load='1vax' size='340' side='right'caption='[[1vax]], [[Resolution|resolution]] 1.99Å' scene=''> | |
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[1vax]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Arthrobacter_globiformis Arthrobacter globiformis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VAX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VAX FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.99Å</td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vax FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vax OCA], [https://pdbe.org/1vax PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vax RCSB], [https://www.ebi.ac.uk/pdbsum/1vax PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vax ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/va/1vax_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1vax ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
[[Category: Arthrobacter globiformis]] | [[Category: Arthrobacter globiformis]] | ||
| - | [[Category: | + | [[Category: Large Structures]] |
| - | + | [[Category: Hossain MT]] | |
| - | [[Category: Hossain | + | [[Category: Imamura S]] |
| - | [[Category: Imamura | + | [[Category: Sekiguchi T]] |
| - | [[Category: Sekiguchi | + | [[Category: Suzuki K]] |
| - | [[Category: Suzuki | + | [[Category: Takenaka A]] |
| - | [[Category: Takenaka | + | [[Category: Yamamoto T]] |
| - | [[Category: Yamamoto | + | |
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
Crystal Structure of Uricase from Arthrobacter globiformis
| |||||||||||

