This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1y39

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:09, 25 October 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='1y39' size='340' side='right'caption='[[1y39]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
<StructureSection load='1y39' size='340' side='right'caption='[[1y39]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1y39]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Atcc_12980 Atcc 12980]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y39 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1Y39 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1y39]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] and [https://en.wikipedia.org/wiki/Geobacillus_stearothermophilus Geobacillus stearothermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y39 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1Y39 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=3CO:COBALT+(III)+ION'>3CO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=GTP:GUANOSINE-5-TRIPHOSPHATE'>GTP</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=3CO:COBALT+(III)+ION'>3CO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=GTP:GUANOSINE-5-TRIPHOSPHATE'>GTP</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1hc8|1hc8]]</div></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1y39 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1y39 OCA], [https://pdbe.org/1y39 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1y39 RCSB], [https://www.ebi.ac.uk/pdbsum/1y39 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1y39 ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1y39 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1y39 OCA], [https://pdbe.org/1y39 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1y39 RCSB], [https://www.ebi.ac.uk/pdbsum/1y39 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1y39 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[https://www.uniprot.org/uniprot/RL11_GEOSE RL11_GEOSE]] Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.
+
[https://www.uniprot.org/uniprot/RL11_GEOSE RL11_GEOSE] Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 32: Line 31:
==See Also==
==See Also==
-
*[[Ribosomal protein L11|Ribosomal protein L11]]
+
*[[Ribosomal protein L11 3D structures|Ribosomal protein L11 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Atcc 12980]]
+
[[Category: Escherichia coli]]
 +
[[Category: Geobacillus stearothermophilus]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Conn, G L]]
+
[[Category: Conn GL]]
-
[[Category: Draper, D E]]
+
[[Category: Draper DE]]
-
[[Category: Dunstan, M S]]
+
[[Category: Dunstan MS]]
-
[[Category: GuhaThakurta, D]]
+
[[Category: GuhaThakurta D]]
-
[[Category: 23s rna]]
+
-
[[Category: Choroplast-like l11 complex]]
+
-
[[Category: Rrna]]
+
-
[[Category: Structural protein-rna complex]]
+
-
[[Category: X-ray crystal structure]]
+

Current revision

Co-evolution of protein and RNA structures within a highly conserved ribosomal domain

PDB ID 1y39

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools