This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2d04
From Proteopedia
(Difference between revisions)
| (5 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| + | |||
==Crystal structure of neoculin, a sweet protein with taste-modifying activity.== | ==Crystal structure of neoculin, a sweet protein with taste-modifying activity.== | ||
| - | <StructureSection load='2d04' size='340' side='right' caption='[[2d04]], [[Resolution|resolution]] 2.76Å' scene=''> | + | <StructureSection load='2d04' size='340' side='right'caption='[[2d04]], [[Resolution|resolution]] 2.76Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[2d04]] is a 8 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[2d04]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Molineria_latifolia Molineria latifolia]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D04 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2D04 FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand= | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.76Å</td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=FUL:BETA-L-FUCOSE'>FUL</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr> |
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2d04 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d04 OCA], [https://pdbe.org/2d04 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2d04 RCSB], [https://www.ebi.ac.uk/pdbsum/2d04 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2d04 ProSAT]</span></td></tr> | ||
</table> | </table> | ||
== Function == | == Function == | ||
| - | [ | + | [https://www.uniprot.org/uniprot/CURC2_MOLLA CURC2_MOLLA] Taste-modifying protein; sweet-tasting. After curculin, water elicits a sweet taste, and sour substances induce a stronger sense of sweetness. |
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d0/2d04_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d0/2d04_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
| - | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2d04 ConSurf]. |
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
| Line 26: | Line 28: | ||
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
</div> | </div> | ||
| + | <div class="pdbe-citations 2d04" style="background-color:#fffaf0;"></div> | ||
== References == | == References == | ||
<references/> | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
[[Category: Molineria latifolia]] | [[Category: Molineria latifolia]] | ||
| - | [[Category: Abe | + | [[Category: Abe K]] |
| - | [[Category: Arai | + | [[Category: Arai S]] |
| - | [[Category: Asakura | + | [[Category: Asakura T]] |
| - | [[Category: Iwata | + | [[Category: Iwata S]] |
| - | [[Category: Misaka | + | [[Category: Misaka T]] |
| - | [[Category: Morita | + | [[Category: Morita Y]] |
| - | [[Category: Nakajima | + | [[Category: Nakajima K]] |
| - | [[Category: Shimizu-Ibuka | + | [[Category: Shimizu-Ibuka A]] |
| - | [[Category: Sorimachi | + | [[Category: Sorimachi H]] |
| - | [[Category: Terada | + | [[Category: Terada T]] |
| - | + | ||
| - | + | ||
Current revision
Crystal structure of neoculin, a sweet protein with taste-modifying activity.
| |||||||||||
Categories: Large Structures | Molineria latifolia | Abe K | Arai S | Asakura T | Iwata S | Misaka T | Morita Y | Nakajima K | Shimizu-Ibuka A | Sorimachi H | Terada T

