2d4e

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:24, 25 October 2023) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2d4e.gif|left|200px]]
 
-
{{Structure
+
==Crystal Structure of the HpcC from Thermus Thermophilus HB8==
-
|PDB= 2d4e |SIZE=350|CAPTION= <scene name='initialview01'>2d4e</scene>, resolution 2.10&Aring;
+
<StructureSection load='2d4e' size='340' side='right'caption='[[2d4e]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene>
+
<table><tr><td colspan='2'>[[2d4e]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D4E OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2D4E FirstGlance]. <br>
-
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/5-carboxymethyl-2-hydroxymuconic-semialdehyde_dehydrogenase 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.2.1.60 1.2.1.60] </span>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
-
|GENE=
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene></td></tr>
-
|DOMAIN=
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2d4e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d4e OCA], [https://pdbe.org/2d4e PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2d4e RCSB], [https://www.ebi.ac.uk/pdbsum/2d4e PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2d4e ProSAT], [https://www.topsan.org/Proteins/RSGI/2d4e TOPSAN]</span></td></tr>
-
|RELATEDENTRY=
+
</table>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2d4e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d4e OCA], [http://www.ebi.ac.uk/pdbsum/2d4e PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2d4e RCSB]</span>
+
== Function ==
-
}}
+
[https://www.uniprot.org/uniprot/Q5SJP9_THET8 Q5SJP9_THET8]
-
 
+
== Evolutionary Conservation ==
-
'''Crystal Structure of the HpcC from Thermus Thermophilus HB8'''
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
==About this Structure==
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d4/2d4e_consurf.spt"</scriptWhenChecked>
-
2D4E is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D4E OCA].
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Single protein]]
+
</jmolCheckbox>
-
[[Category: Thermus thermophilus]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2d4e ConSurf].
-
[[Category: Kunishima, N.]]
+
<div style="clear:both"></div>
-
[[Category: Mizutani, H.]]
+
__TOC__
-
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+
</StructureSection>
-
[[Category: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase]]
+
[[Category: Large Structures]]
-
[[Category: hpcc]]
+
[[Category: Thermus thermophilus HB8]]
-
[[Category: national project on protein structural and functional analyse]]
+
[[Category: Kunishima N]]
-
[[Category: nppsfa]]
+
[[Category: Mizutani H]]
-
[[Category: riken structural genomics/proteomics initiative]]
+
-
[[Category: rsgi]]
+
-
[[Category: structural genomic]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 02:30:09 2008''
+

Current revision

Crystal Structure of the HpcC from Thermus Thermophilus HB8

PDB ID 2d4e

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2d4e"
Personal tools