This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2d8d

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:24, 25 October 2023) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2d8d.png|left|200px]]
 
-
<!--
+
==Structure of Chorismate Mutase (Form I) from Thermus Thermophilus HB8==
-
The line below this paragraph, containing "STRUCTURE_2d8d", creates the "Structure Box" on the page.
+
<StructureSection load='2d8d' size='340' side='right'caption='[[2d8d]], [[Resolution|resolution]] 1.15&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2d8d]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D8D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2D8D FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.15&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
-
{{STRUCTURE_2d8d| PDB=2d8d | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2d8d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d8d OCA], [https://pdbe.org/2d8d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2d8d RCSB], [https://www.ebi.ac.uk/pdbsum/2d8d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2d8d ProSAT], [https://www.topsan.org/Proteins/RSGI/2d8d TOPSAN]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q5SLA5_THET8 Q5SLA5_THET8]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d8/2d8d_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2d8d ConSurf].
 +
<div style="clear:both"></div>
-
===Structure of Chorismate Mutase (Form I) from Thermus Thermophilus HB8===
+
==See Also==
-
 
+
*[[3D structures of chorismate mutase|3D structures of chorismate mutase]]
-
 
+
__TOC__
-
==About this Structure==
+
</StructureSection>
-
2D8D is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D8D OCA].
+
[[Category: Large Structures]]
-
[[Category: Chorismate mutase]]
+
[[Category: Thermus thermophilus HB8]]
-
[[Category: Single protein]]
+
[[Category: Bagautdinov B]]
-
[[Category: Thermus thermophilus]]
+
[[Category: Kunishima N]]
-
[[Category: Bagautdinov, B.]]
+
-
[[Category: Kunishima, N.]]
+
-
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+
-
[[Category: Chorismate]]
+
-
[[Category: Dimer]]
+
-
[[Category: National project on protein structural and functional analyse]]
+
-
[[Category: Nppsfa]]
+
-
[[Category: Riken structural genomics/proteomics initiative]]
+
-
[[Category: Rsgi]]
+
-
[[Category: Structural genomic]]
+
-
[[Category: X-ray diffraction]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Sep 28 19:38:21 2008''
+

Current revision

Structure of Chorismate Mutase (Form I) from Thermus Thermophilus HB8

PDB ID 2d8d

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2d8d"
Personal tools