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2dbo
From Proteopedia
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| - | [[Image:2dbo.gif|left|200px]]<br /><applet load="2dbo" size="350" color="white" frame="true" align="right" spinBox="true" | ||
| - | caption="2dbo, resolution 2.76Å" /> | ||
| - | '''Crystal structure of D-Tyr-tRNA(Tyr) deacylase from Aquifex aeolicus'''<br /> | ||
| - | == | + | ==Crystal structure of D-Tyr-tRNA(Tyr) deacylase from Aquifex aeolicus== |
| - | + | <StructureSection load='2dbo' size='340' side='right'caption='[[2dbo]], [[Resolution|resolution]] 2.76Å' scene=''> | |
| - | [[ | + | == Structural highlights == |
| - | [[ | + | <table><tr><td colspan='2'>[[2dbo]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Aquifex_aeolicus_VF5 Aquifex aeolicus VF5]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DBO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DBO FirstGlance]. <br> |
| - | [[ | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.76Å</td></tr> |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dbo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dbo OCA], [https://pdbe.org/2dbo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dbo RCSB], [https://www.ebi.ac.uk/pdbsum/2dbo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dbo ProSAT], [https://www.topsan.org/Proteins/RSGI/2dbo TOPSAN]</span></td></tr> | |
| - | + | </table> | |
| - | [ | + | == Function == |
| - | [[ | + | [https://www.uniprot.org/uniprot/DTD_AQUAE DTD_AQUAE] Hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr). Could be a defense mechanism against a harmful effect of D-tyrosine (By similarity). |
| - | [ | + | == Evolutionary Conservation == |
| - | [[ | + | [[Image:Consurf_key_small.gif|200px|right]] |
| - | + | Check<jmol> | |
| - | [[Category: | + | <jmolCheckbox> |
| - | [[Category: | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/db/2dbo_consurf.spt"</scriptWhenChecked> |
| - | [[Category: | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> |
| - | [[Category: | + | <text>to colour the structure by Evolutionary Conservation</text> |
| - | [[Category: | + | </jmolCheckbox> |
| - | [[Category: | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2dbo ConSurf]. |
| - | [[Category: | + | <div style="clear:both"></div> |
| - | + | __TOC__ | |
| - | + | </StructureSection> | |
| + | [[Category: Aquifex aeolicus VF5]] | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Bessho Y]] | ||
| + | [[Category: Ishii T]] | ||
| + | [[Category: Shibata R]] | ||
| + | [[Category: Shirouzu M]] | ||
| + | [[Category: Yokoyama S]] | ||
Current revision
Crystal structure of D-Tyr-tRNA(Tyr) deacylase from Aquifex aeolicus
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