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2dep

From Proteopedia

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{{Seed}}
 
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[[Image:2dep.png|left|200px]]
 
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==Crystal Structure of xylanase B from Clostridium stercorarium F9==
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The line below this paragraph, containing "STRUCTURE_2dep", creates the "Structure Box" on the page.
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<StructureSection load='2dep' size='340' side='right'caption='[[2dep]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2dep]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermoclostridium_stercorarium Thermoclostridium stercorarium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DEP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DEP FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dep FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dep OCA], [https://pdbe.org/2dep PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dep RCSB], [https://www.ebi.ac.uk/pdbsum/2dep PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dep ProSAT]</span></td></tr>
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{{STRUCTURE_2dep| PDB=2dep | SCENE= }}
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</table>
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== Function ==
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===Crystal Structure of xylanase B from Clostridium stercorarium F9===
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[https://www.uniprot.org/uniprot/CEXY_THEST CEXY_THEST] Active toward xylan, carboxymethylcellulose, P-nitrophenyl-beta-D-xylopyranoside and P-nitrophenyl-beta-D-cellobioside.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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==About this Structure==
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Check<jmol>
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2DEP is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Clostridium_stercorarium Clostridium stercorarium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DEP OCA].
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/de/2dep_consurf.spt"</scriptWhenChecked>
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==Reference==
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<ref group="xtra">PMID:14747719</ref><ref group="xtra">PMID:15914908</ref><ref group="xtra">PMID:16233324</ref><references group="xtra"/>
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<text>to colour the structure by Evolutionary Conservation</text>
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[[Category: Clostridium stercorarium]]
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</jmolCheckbox>
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[[Category: Fushinobu, S.]]
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2dep ConSurf].
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[[Category: Hayashi, K.]]
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<div style="clear:both"></div>
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[[Category: Kitaoka, M.]]
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__TOC__
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[[Category: Miyanaga, A.]]
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</StructureSection>
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[[Category: Nishimoto, M.]]
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[[Category: Large Structures]]
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[[Category: Family 10]]
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[[Category: Thermoclostridium stercorarium]]
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[[Category: Glycosidase]]
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[[Category: Fushinobu S]]
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[[Category: National project on protein structural and functional analyse]]
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[[Category: Hayashi K]]
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[[Category: Nppsfa]]
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[[Category: Kitaoka M]]
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[[Category: Structural genomic]]
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[[Category: Miyanaga A]]
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[[Category: Xylan degradation]]
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[[Category: Nishimoto M]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 04:49:41 2009''
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Current revision

Crystal Structure of xylanase B from Clostridium stercorarium F9

PDB ID 2dep

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