2dfa

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:26, 25 October 2023) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2dfa.gif|left|200px]]
 
-
<!--
+
==Crystal Structure of Lactam Utilization Protein from Thermus thermophilus HB8==
-
The line below this paragraph, containing "STRUCTURE_2dfa", creates the "Structure Box" on the page.
+
<StructureSection load='2dfa' size='340' side='right'caption='[[2dfa]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2dfa]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DFA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DFA FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dfa FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dfa OCA], [https://pdbe.org/2dfa PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dfa RCSB], [https://www.ebi.ac.uk/pdbsum/2dfa PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dfa ProSAT], [https://www.topsan.org/Proteins/RSGI/2dfa TOPSAN]</span></td></tr>
-
{{STRUCTURE_2dfa| PDB=2dfa | SCENE= }}
+
</table>
-
 
+
== Function ==
-
'''Crystal Structure of Lactam Utilization Protein from Thermus thermophilus HB8'''
+
[https://www.uniprot.org/uniprot/PXPA_THET8 PXPA_THET8] Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.[HAMAP-Rule:MF_00691]
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
==About this Structure==
+
Check<jmol>
-
2DFA is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DFA OCA].
+
<jmolCheckbox>
-
[[Category: Single protein]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/df/2dfa_consurf.spt"</scriptWhenChecked>
-
[[Category: Thermus thermophilus]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Kunishima, N.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Mizutani, H.]]
+
</jmolCheckbox>
-
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2dfa ConSurf].
-
[[Category: Lactam utilization protein]]
+
<div style="clear:both"></div>
-
[[Category: National project on protein structural and functional analyse]]
+
__TOC__
-
[[Category: Nppsfa]]
+
</StructureSection>
-
[[Category: Riken structural genomics/proteomics initiative]]
+
[[Category: Large Structures]]
-
[[Category: Rsgi]]
+
[[Category: Thermus thermophilus HB8]]
-
[[Category: Structural genomic]]
+
[[Category: Kunishima N]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May 4 00:18:44 2008''
+
[[Category: Mizutani H]]

Current revision

Crystal Structure of Lactam Utilization Protein from Thermus thermophilus HB8

PDB ID 2dfa

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2dfa"
Personal tools