2e5f

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:35, 25 October 2023) (edit) (undo)
 
(13 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2e5f.gif|left|200px]]
 
-
{{Structure
+
==Crystal Structure of the PH0510 protein from Pyrococcus horikoshii OT3 in complex with phosphate ion==
-
|PDB= 2e5f |SIZE=350|CAPTION= <scene name='initialview01'>2e5f</scene>, resolution 1.35&Aring;
+
<StructureSection load='2e5f' size='340' side='right'caption='[[2e5f]], [[Resolution|resolution]] 1.35&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>
+
<table><tr><td colspan='2'>[[2e5f]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii_OT3 Pyrococcus horikoshii OT3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2E5F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2E5F FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.35&#8491;</td></tr>
-
|GENE=
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-
|DOMAIN=
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2e5f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2e5f OCA], [https://pdbe.org/2e5f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2e5f RCSB], [https://www.ebi.ac.uk/pdbsum/2e5f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2e5f ProSAT], [https://www.topsan.org/Proteins/RSGI/2e5f TOPSAN]</span></td></tr>
-
|RELATEDENTRY=[[2dec|2DEC]], [[2df8|2DF8]]
+
</table>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2e5f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2e5f OCA], [http://www.ebi.ac.uk/pdbsum/2e5f PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2e5f RCSB]</span>
+
== Function ==
-
}}
+
[https://www.uniprot.org/uniprot/O58246_PYRHO O58246_PYRHO]
-
 
+
== Evolutionary Conservation ==
-
'''Crystal Structure of the PH0510 protein from Pyrococcus horikoshii OT3 in complex with phosphate ion'''
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
==About this Structure==
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/e5/2e5f_consurf.spt"</scriptWhenChecked>
-
2E5F is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2E5F OCA].
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Pyrococcus horikoshii]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Single protein]]
+
</jmolCheckbox>
-
[[Category: Kunishima, N.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2e5f ConSurf].
-
[[Category: Mizutani, H.]]
+
<div style="clear:both"></div>
-
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+
__TOC__
-
[[Category: national project on protein structural and functional analyse]]
+
</StructureSection>
-
[[Category: nppsfa]]
+
[[Category: Large Structures]]
-
[[Category: riken structural genomics/proteomics initiative]]
+
[[Category: Pyrococcus horikoshii OT3]]
-
[[Category: rsgi]]
+
[[Category: Kunishima N]]
-
[[Category: structural genomic]]
+
[[Category: Mizutani H]]
-
[[Category: sugar binding protein]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 02:43:59 2008''
+

Current revision

Crystal Structure of the PH0510 protein from Pyrococcus horikoshii OT3 in complex with phosphate ion

PDB ID 2e5f

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2e5f"
Personal tools